scaffold_600621.1 (Arabidopsis lyrata)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00447 (HSF_DNA-bind) IPR000232 scaffold_600621.1 T242015_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HSFB2A
M00869_2.00 		Arabidopsis thaliana
NNNNNTTCB
VGAANNNNN		 PBM
Franco-Zorrilla et al.(2014)
HSFB2A 		0.335 0.352
HSFB2A
M06952_2.00 		Arabidopsis thaliana
GAANNTTCYAGA
TCTRGAANNTTC		 Dap-seq
OMalley et al.(2016)
HSF6_col_a 		0.335 0.352
HSFA4A
M06947_2.00 		Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN		 Dap-seq
OMalley et al.(2016)
HSF21_col_a 		0.326 0.420
HSFA1E
M06939_2.00 		Arabidopsis thaliana
RGAANNTTCTAGA
TCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSFA1E_col_a 		0.320 0.375
HSFA1E
M06940_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFA1E_colamp_a 		0.320 0.375
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_600621.1 HSF 5 97

Links

Other HSF family TFs
Other Arabidopsis lyrata TFs

144 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AtMYB10 Arabidopsis thaliana AT3G12820 D
ATMYB48 Arabidopsis thaliana AT3G46130 I
BGIOSGA002307 Oryza indica BGIOSGA002307 N
BGIOSGA013008 Oryza indica BGIOSGA013008 N
BGIOSGA027658 Oryza indica BGIOSGA027658 N
BGIOSGA037085 Oryza indica BGIOSGA037085 N
Bo5g131980 Brassica oleracea Bo5g131980 N
Bostr.18473s0331 Boechera stricta Bostr.18473s0331 I
Bostr.26833s0259 Boechera stricta Bostr.26833s0259 N
Bra009910 Brassica rapa Bra009910 N
BRADI2G11080 Brachypodium distachyon BRADI2G11080 I
BRADI4G09490 Brachypodium distachyon BRADI4G09490 N
Cagra.10637s0001 Capsella grandiflora Cagra.10637s0001 I
Cagra.1317s0038 Capsella grandiflora Cagra.1317s0038 N
Cagra.17198s0001 Capsella grandiflora Cagra.17198s0001 N
Cagra.2519s0060 Capsella grandiflora Cagra.2519s0060 N
cassava11833.valid.m1 Manihot esculenta cassava11833.valid.m1 N
Ciclev10029019m.g Citrus clementina Ciclev10029019m.g N
Cucsa.061660 Cucumis sativus Cucsa.061660 I
Eucgr.D02099 Eucalyptus grandis Eucgr.D02099 N
Eucgr.J02073 Eucalyptus grandis Eucgr.J02073 N
evm.TU.contig_33658 Carica papaya evm.TU.contig_33658 N
F775_22650 Aegilops tauschii F775_22650 N
gene13970-v1.0-hybrid Fragaria vesca gene13970-v1.0-hybrid N
GLYMA16G00920 Glycine max GLYMA16G00920 I
Gorai.001G107900 Gossypium raimondii Gorai.001G107900 I
Gorai.013G139200 Gossypium raimondii Gorai.013G139200 I
GRMZM2G001223 Zea mays GRMZM2G001223 I
GRMZM2G032180 Zea mays GRMZM2G032180 N
GRMZM2G130149 Zea mays GRMZM2G130149 I
MDP0000153773 Malus domestica MDP0000153773 N
MDP0000475808 Malus domestica MDP0000475808 N
mgf001247m Mimulus guttatus mgf001247m N
MLOC_16981 Hordeum vulgare MLOC_16981 I
MLOC_17928 Hordeum vulgare MLOC_17928 I
MTR_2g096380 Medicago truncatula MTR_2g096380 I
MTR_4g063100 Medicago truncatula MTR_4g063100 I
MTR_7g111290 Medicago truncatula MTR_7g111290 I
MYB21 Arabidopsis thaliana AT3G27810 I
MYB24 Arabidopsis thaliana AT5G40350 D
MYB59 Arabidopsis thaliana AT5G59780 D
MYB86 Arabidopsis thaliana AT5G26660 I
OBART12G16130 Oryza barthii OBART12G16130 N
OGLUM12G17720 Oryza glumaepatula OGLUM12G17720 N
orange1.1g023677m.g Citrus sinensis orange1.1g023677m.g I
orange1.1g040653m.g Citrus sinensis orange1.1g040653m.g N
orange1.1g044587m.g Citrus sinensis orange1.1g044587m.g N
ORGLA01G0040600 Oryza glaberrima ORGLA01G0040600 N
Pavir.Fa00877 Panicum virgatum Pavir.Fa00877 I
Pavir.Gb01276 Panicum virgatum Pavir.Gb01276 N
Pavir.Ha00303 Panicum virgatum Pavir.Ha00303 I
Pavir.J19088 Panicum virgatum Pavir.J19088 N
Pavir.J23620 Panicum virgatum Pavir.J23620 N
PDK_20s1376841g001 Phoenix dactylifera PDK_20s1376841g001 N
PDK_20s1415541g003 Phoenix dactylifera PDK_20s1415541g003 N
PDK_20s1528141g001 Phoenix dactylifera PDK_20s1528141g001 N
PK27824.1 Cannabis sativa PK27824.1 N
POPTR_0006s23810 Populus trichocarpa POPTR_0006s23810 I
PRUPE_ppa008906mg Prunus persica PRUPE_ppa008906mg I
SapurV1A.0040s0010 Salix purpurea SapurV1A.0040s0010 I
SapurV1A.0177s0130 Salix purpurea SapurV1A.0177s0130 I
SapurV1A.0263s0400 Salix purpurea SapurV1A.0263s0400 I
SapurV1A.0489s0220 Salix purpurea SapurV1A.0489s0220 I
SapurV1A.1387s0090 Salix purpurea SapurV1A.1387s0090 I
Sb08g018580 Sorghum bicolor Sb08g018580 I
Si003873m.g Setaria italica Si003873m.g N
TCM_021433 Theobroma cacao TCM_021433 I
Thhalv10014524m.g Eutrema salsugineum Thhalv10014524m.g I
Traes_2BL_DAA2104F5 Triticum aestivum Traes_2BL_DAA2104F5 N
Traes_5AS_7D519210E Triticum aestivum Traes_5AS_7D519210E N
Traes_5AS_D9A4C1AB0 Triticum aestivum Traes_5AS_D9A4C1AB0 N
Traes_5BS_D1C03C165 Triticum aestivum Traes_5BS_D1C03C165 N
Traes_5DS_1EF547639 Triticum aestivum Traes_5DS_1EF547639 N
TRIUR3_32110 Triticum urartu TRIUR3_32110 N
TT2 Arabidopsis thaliana AT5G35550 I
WER Arabidopsis thaliana AT5G14750 D