GSMUA_Achr2G13400_001 (Musa acuminata)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 GSMUA_Achr2G13400_001 T245318_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.768 0.768
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr2P13400_001 LOB 8 81

Links

Other LOB family TFs
Other Musa acuminata TFs

75 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29929.m004500 Ricinus communis 29929.m004500 I 0.768
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.710
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.768
BRADI1G14677 Brachypodium distachyon BRADI1G14677 N 0.725
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.710
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.768
cassava16846.m1 Manihot esculenta cassava16846.m1 I 0.783
Ca_11161 Cicer arietinum Ca_11161 I 0.725
Ca_20200 Cicer arietinum Ca_20200 I 0.725
chr2.LjT16G06.10.nd Lotus japonicus chr2.LjT16G06.10.nd I 0.710
Cla005851 Citrullus lanatus Cla005851 I 0.754
Cla020438 Citrullus lanatus Cla020438 I 0.739
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.754
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.766
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.768
F775_21760 Aegilops tauschii F775_21760 I 0.739
F775_25656 Aegilops tauschii F775_25656 I 0.710
F775_33210 Aegilops tauschii F775_33210 I 0.712
GLYMA01G39060 Glycine max GLYMA01G39060 I 0.725
GLYMA06G11181 Glycine max GLYMA06G11181 I 0.710
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.725
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.725
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.754
GRMZM2G118250 Zea mays GRMZM2G118250 I 0.739
GRMZM2G154320 Zea mays GRMZM2G154320 N 0.739
GSMUA_Achr11G26500_001 Musa acuminata GSMUA_Achr11G26500_001 I 0.742
GSMUA_Achr5G25770_001 Musa acuminata GSMUA_Achr5G25770_001 I 0.742
GSMUA_Achr6G04670_001 Musa acuminata GSMUA_Achr6G04670_001 I 0.739
LBD6 Oryza indica BGIOSGA004955 I 0.739
LBD6 Oryza sativa OS01G0889400 I 0.739
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.710
LPERR01G34430 Leersia perrieri LPERR01G34430 I 0.739
LPERR03G21590 Leersia perrieri LPERR03G21590 I 0.768
MDP0000643326 Malus domestica MDP0000643326 I 0.754
MDP0000777060 Malus domestica MDP0000777060 I 0.710
mgf004296m Mimulus guttatus mgf004296m I 0.710
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.725
OB01G14220 Oryza brachyantha OB01G14220 I 0.710
OB01G48740 Oryza brachyantha OB01G48740 I 0.739
OBART01G39990 Oryza barthii OBART01G39990 I 0.739
OGLUM01G44190 Oryza glumaepatula OGLUM01G44190 I 0.739
OLONG_016086 Oryza longistaminata OLONG_016086 I 0.739
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.710
OMERI01G36900 Oryza meridionalis OMERI01G36900 I 0.739
ONIVA01G44840 Oryza nivara ONIVA01G44840 I 0.739
OPUNC01G38680 Oryza punctata OPUNC01G38680 I 0.739
ORGLA01G0339000 Oryza glaberrima ORGLA01G0339000 I 0.739
ORUFI01G43320 Oryza rufipogon ORUFI01G43320 I 0.739
Pavir.Ea03589 Panicum virgatum Pavir.Ea03589 I 0.739
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.710
Pavir.J03238 Panicum virgatum Pavir.J03238 I 0.710
Pavir.J16692 Panicum virgatum Pavir.J16692 I 0.739
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.710
PGSC0003DMG401000764 Solanum tuberosum PGSC0003DMG401000764 I 0.710
PGSC0003DMG402000764 Solanum tuberosum PGSC0003DMG402000764 I 0.739
PK18922.1 Cannabis sativa PK18922.1 I 0.860
Pm010483 Prunus mume Pm010483 I 0.725
POPTR_0005s14150 Populus trichocarpa POPTR_0005s14150 I 0.768
POPTR_0007s11460 Populus trichocarpa POPTR_0007s11460 I 0.768
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.754
PRUPE_ppa015145mg Prunus persica PRUPE_ppa015145mg I 0.725
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.754
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.710
Sb03g042310 Sorghum bicolor Sb03g042310 I 0.739
Si002599m.g Setaria italica Si002599m.g I 0.739
Si002632m.g Setaria italica Si002632m.g I 0.710
Si036905m.g Setaria italica Si036905m.g I 0.754
Solyc02g065150.1 Solanum lycopersicum Solyc02g065150.1 I 0.739
TCM_000560 Theobroma cacao TCM_000560 I 0.754
TCM_024217 Theobroma cacao TCM_024217 I 0.768
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.739
Traes_1DL_1290B6A52 Triticum aestivum Traes_1DL_1290B6A52 I 0.723
TRIUR3_06488 Triticum urartu TRIUR3_06488 I 0.739
TRIUR3_23928 Triticum urartu TRIUR3_23928 I 0.710
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.833