Bo4g139260 (Brassica oleracea)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bo4g139260 T253112_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL78
M10932_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT5G65330_01 		0.725 0.725
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo4g139260.1 MADS box 26 65

Links

Other MADS box family TFs
Other Brassica oleracea TFs

19 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL105 Arabidopsis thaliana AT5G37415 I 0.731
AGL43 Arabidopsis thaliana AT5G40220 I 0.775
AGL51 Arabidopsis thaliana AT4G02235 I 0.700
AGL52 Arabidopsis thaliana AT4G11250 I 0.700
AGL75 Arabidopsis thaliana AT5G41200 I 0.705
AGL76 Arabidopsis thaliana AT5G40120 I 0.775
AGL77 Arabidopsis thaliana AT5G38740 I 0.775
AGL81 Arabidopsis thaliana AT5G39750 I 0.775
Al_scaffold_0007_3741 Arabidopsis lyrata Al_scaffold_0007_3741 I 0.775
Bo4g139560 Brassica oleracea Bo4g139560 N 0.900
Bo4g139620 Brassica oleracea Bo4g139620 N 0.900
Bo4g139640 Brassica oleracea Bo4g139640 N 0.900
Bra025607 Brassica rapa Bra025607 N 0.837
Bra025609 Brassica rapa Bra025609 I 0.766
Bra025619 Brassica rapa Bra025619 N 0.900
Carubv10006654m.g Capsella rubella Carubv10006654m.g I 0.700
fgenesh2_kg.7__3412__AT5G41200.1 Arabidopsis lyrata fgenesh2_kg.7__3412__AT5G41200.1 I 0.750
scaffold_704060.1 Arabidopsis lyrata scaffold_704060.1 I 0.775
Thhalv10028184m.g Eutrema salsugineum Thhalv10028184m.g I 0.725