ENSXMAG00000018559 (Xiphophorus maculatus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 ENSXMAG00000018559 T253876_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.880 0.880
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.880 0.880
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.880 0.880
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.880 0.880
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.880 0.880
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.880 0.880
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.880 0.880
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.880 0.880
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.880 0.880
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.880 0.880
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.880 0.880
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.880 0.880
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.880 0.880
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.880 0.880
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.880 0.880
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.880 0.880
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.880 0.880
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.880 0.880
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.880 0.880
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.880 0.880
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.880 0.880
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.880 0.880
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.840 0.840
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.840 0.840
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.800 0.800
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSXMAP00000018599 MADS box 116 140

Links

Other MADS box family TFs
Other Xiphophorus maculatus TFs

71 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL010925 Aedes aegypti AAEL010925 I 0.905
AALB009947 Anopheles albimanus AALB009947 I 0.840
AARA006326 Anopheles arabiensis AARA006326 I 0.913
AATE005744 Anopheles atroparvus AATE005744 I 0.958
ACEP12187 Atta cephalotes ACEP12187 I 0.840
ACHR006794 Anopheles christyi ACHR006794 I 0.920
ACOM041695 Anopheles coluzzii ACOM041695 I 0.913
ACUA001543 Anopheles culicifacies ACUA001543 I 0.917
AEPI007009 Anopheles epiroticus AEPI007009 I 0.955
AFAF006302 Anopheles farauti AFAF006302 I 0.913
AFUN006149 Anopheles funestus AFUN006149 I 0.955
AGAP010511 Anopheles gambiae AGAP010511 I 0.913
ALUE_0001693901 Ascaris lumbricoides ALUE_0001693901 I 0.800
AMAM005702 Anopheles maculatus AMAM005702 I 0.917
AMEC009624 Anopheles melas AMEC009624 I 0.913
AMIN001256 Anopheles minimus AMIN001256 I 0.840
ANCDUO_13359 Ancylostoma duodenale ANCDUO_13359 I 0.800
ANCDUO_18278 Ancylostoma duodenale ANCDUO_18278 I 0.870
AQUA001309 Anopheles quadriannulatus AQUA001309 I 0.913
ASTEI07121 Anopheles stephensi ASTEI07121 I 0.875
BGIBMGA001382 Bombyx mori BGIBMGA001382 I 0.875
bs Drosophila melanogaster FBgn0004101 D 0.840
Cflo_11261--XP_001120126.1_APIME Camponotus floridanus Cflo_11261--XP_001120126.1_APIME I 0.840
CLEC013393 Cimex lectularius CLEC013393 I 0.917
CPIJ008336 Culex quinquefasciatus CPIJ008336 I 0.815
CPIJ016459 Culex quinquefasciatus CPIJ016459 I 0.913
CpipJ_CPIJ008336 Culex pipiens CpipJ_CPIJ008336 I 0.815
CpipJ_CPIJ016459 Culex pipiens CpipJ_CPIJ016459 I 0.913
D917_02561 Trichinella nativa D917_02561 I 0.880
D918_07967 Trichuris suis D918_07967 I 0.880
DAPPUDRAFT_8703 Daphnia pulex DAPPUDRAFT_8703 I 0.880
EFV60876 Trichinella spiralis EFV60876 I 0.880
ENSCSAVG00000008682 Ciona savignyi ENSCSAVG00000008682 I 0.840
fgenesh2_pg.scaffold_196000035 Branchiostoma floridae fgenesh2_pg.scaffold_196000035 I 0.880
fgenesh2_pg.scaffold_8000100 Branchiostoma floridae fgenesh2_pg.scaffold_8000100 I 0.880
GA17433 Drosophila pseudoobscura FBgn0077446 I 0.840
GB47234 Apis mellifera GB47234 I 0.840
GD11852 Drosophila simulans FBgn0183591 I 0.840
GE14398 Drosophila yakuba FBgn0232006 I 0.840
GF11392 Drosophila ananassae FBgn0088432 I 0.840
GG22961 Drosophila erecta FBgn0115118 I 0.840
GH20989 Drosophila grimshawi FBgn0128451 I 0.840
GI21322 Drosophila mojavensis FBgn0144052 I 0.840
GJ21595 Drosophila virilis FBgn0208714 I 0.840
GK22205 Drosophila willistoni FBgn0224190 I 0.840
GL20046 Drosophila persimilis FBgn0157643 I 0.840
GM11854 Drosophila sechellia FBgn0166795 I 0.840
HelroG137972 Helobdella robusta HelroG137972 I 0.760
HHAL001484-PA Halyomorpha halys HHAL001484-PA I 0.917
HMEL017831 Heliconius melpomene HMEL017831 I 0.917
Hsal_11632--XP_001120126.1_APIME Harpegnathos saltator Hsal_11632--XP_001120126.1_APIME I 0.840
ISCW019966 Ixodes scapularis ISCW019966 I 0.880
KGM_22252 Danaus plexippus KGM_22252 I 0.917
L798_08800 Zootermopsis nevadensis L798_08800 I 0.840
LCUP011662 Lucilia cuprina LCUP011662 I 0.875
LDEC007646 Leptinotarsa decemlineata LDEC007646 I 0.917
MDOA002443 Musca domestica MDOA002443 I 0.840
MESCA004860 Megaselia scalaris MESCA004860 I 0.920
NV18787 Nasonia vitripennis NV18787 I 0.840
OFLC_0001346401 Onchocerca flexuosa OFLC_0001346401 I 0.741
PPAI006358 Phlebotomus papatasi PPAI006358 I 0.733
RPRC001752 Rhodnius prolixus RPRC001752 I 0.815
Sakowv30019106m.g Saccoglossus kowalevskii Sakowv30019106m.g I 0.880
SBAD_0000850501 Soboliphyme baturini SBAD_0000850501 I 0.880
SINV23963 Solenopsis invicta SINV23963 I 0.917
SMAR003014 Strigamia maritima SMAR003014 I 0.880
SRF Oryzias latipes ENSORLG00000013036 I 0.960
SRF Choloepus hoffmanni ENSCHOG00000008671 I 1.000
TMUE_s0092001100 Trichuris muris TMUE_s0092001100 I 0.880
TTRE_0000468501 Trichuris trichiura TTRE_0000468501 I 0.880
YQE_03076 Dendroctonus ponderosae YQE_03076 I 0.800