CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ACHR006794
(
Anopheles christyi
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
ACHR006794
T259475_2.00
Vectorbase (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
bs
M03915_2.00
Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN
SELEX
Nitta et al.(2015)
bs_1
0.733
0.733
bs
M03916_2.00
Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN
SELEX
Nitta et al.(2015)
bs_2
0.733
0.733
Srf
M00178_2.00
Mus musculus
NNDDWWHHNN
NNDDWWHHNN
PBM
Badis et al.(2009)
Srf_3509
0.700
0.700
unc-120
M00684_2.00
Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG
PBM
Narasimhan et al.(2015)
pTH10822
0.700
0.700
SRF
M03341_2.00
Homo sapiens
DCCWTATATGGT
ACCATATAWGGH
SELEX
Jolma et al.(2013)
SRF_1
0.700
0.700
SRF
M03342_2.00
Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA
SELEX
Jolma et al.(2013)
SRF_2
0.700
0.700
SRF
M05553_2.00
Homo sapiens
CCNTANAWGG
CCWTNTANGG
SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX
0.700
0.700
SRF
M07981_2.00
Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN
ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha
0.700
0.700
SRF
M07982_2.00
Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG
ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha
0.700
0.700
SRF
M07983_2.00
Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN
ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha
0.700
0.700
SRF
M07984_2.00
Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC
ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha
0.700
0.700
SRF
M09249_2.00
Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND
Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A
0.700
0.700
Srf
M09254_2.00
Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN
Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A
0.700
0.700
Srf
M09598_2.00
Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG
Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al.
0.700
0.700
SRF
M10947_2.00
Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK
Transfac
Matys et al.(2006)
V$SRF_01
0.700
0.700
SRF
M10948_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_02
0.700
0.700
SRF
M10949_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_03
0.700
0.700
SRF
M10950_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_09
0.700
0.700
SRF
M10951_2.00
Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH
Transfac
Matys et al.(2006)
V$SRF_C
0.700
0.700
SRF
M10952_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q3
0.700
0.700
SRF
M10953_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q4
0.700
0.700
SRF
M10954_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q5_01
0.700
0.700
SRF
M10955_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q5_02
0.700
0.700
SRF
M10956_2.00
Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV
Transfac
Matys et al.(2006)
V$SRF_Q6
0.700
0.700
SRF
M05554_2.00
Homo sapiens
CCNTAYAWGG
CCWTRTANGG
SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX
0.700
0.700
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ACHR006794-PA
MADS box
155
184
YIDNKLRRYTTFSKRKTGIMKKVSGFVIVL
Links
Other
MADS box
family TFs
Other
Anopheles christyi
TFs
69 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AATE005744
Anopheles atroparvus
AATE005744
I
1.000
AEPI007009
Anopheles epiroticus
AEPI007009
I
1.000
AFUN006149
Anopheles funestus
AFUN006149
I
1.000
HMEL017831
Heliconius melpomene
HMEL017831
I
0.958
KGM_22252
Danaus plexippus
KGM_22252
I
0.958
SINV23963
Solenopsis invicta
SINV23963
I
0.958
CLEC013393
Cimex lectularius
CLEC013393
I
0.958
HHAL001484-PA
Halyomorpha halys
HHAL001484-PA
I
0.958
LDEC007646
Leptinotarsa decemlineata
LDEC007646
I
0.958
ACUA001543
Anopheles culicifacies
ACUA001543
I
0.958
AMAM005702
Anopheles maculatus
AMAM005702
I
0.958
CpipJ_CPIJ016459
Culex pipiens
CpipJ_CPIJ016459
I
0.957
AGAP010511
Anopheles gambiae
AGAP010511
I
0.957
CPIJ016459
Culex quinquefasciatus
CPIJ016459
I
0.957
AARA006326
Anopheles arabiensis
AARA006326
I
0.957
ACOM041695
Anopheles coluzzii
ACOM041695
I
0.957
AFAF006302
Anopheles farauti
AFAF006302
I
0.957
AMEC009624
Anopheles melas
AMEC009624
I
0.957
AQUA001309
Anopheles quadriannulatus
AQUA001309
I
0.957
SRF
Choloepus hoffmanni
ENSCHOG00000008671
I
0.955
AAEL010925
Aedes aegypti
AAEL010925
I
0.952
ENSXMAG00000018559
Xiphophorus maculatus
ENSXMAG00000018559
I
0.920
AALB009947
Anopheles albimanus
AALB009947
I
0.920
BGIBMGA001382
Bombyx mori
BGIBMGA001382
I
0.917
LCUP011662
Lucilia cuprina
LCUP011662
I
0.917
ASTEI07121
Anopheles stephensi
ASTEI07121
I
0.917
ANCDUO_18278
Ancylostoma duodenale
ANCDUO_18278
I
0.913
RPRC001752
Rhodnius prolixus
RPRC001752
I
0.852
YQE_03076
Dendroctonus ponderosae
YQE_03076
I
0.840
CpipJ_CPIJ008336
Culex pipiens
CpipJ_CPIJ008336
I
0.815
CPIJ008336
Culex quinquefasciatus
CPIJ008336
I
0.815
MESCA004860
Megaselia scalaris
MESCA004860
I
0.800
OFLC_0001346401
Onchocerca flexuosa
OFLC_0001346401
I
0.778
SRF
Oryzias latipes
ENSORLG00000013036
I
0.767
PPAI006358
Phlebotomus papatasi
PPAI006358
I
0.767
ACEP12187
Atta cephalotes
ACEP12187
I
0.733
bs
Drosophila melanogaster
FBgn0004101
D
0.733
GA17433
Drosophila pseudoobscura
FBgn0077446
I
0.733
GF11392
Drosophila ananassae
FBgn0088432
I
0.733
GG22961
Drosophila erecta
FBgn0115118
I
0.733
GH20989
Drosophila grimshawi
FBgn0128451
I
0.733
GI21322
Drosophila mojavensis
FBgn0144052
I
0.733
GL20046
Drosophila persimilis
FBgn0157643
I
0.733
GM11854
Drosophila sechellia
FBgn0166795
I
0.733
GD11852
Drosophila simulans
FBgn0183591
I
0.733
GJ21595
Drosophila virilis
FBgn0208714
I
0.733
GK22205
Drosophila willistoni
FBgn0224190
I
0.733
GE14398
Drosophila yakuba
FBgn0232006
I
0.733
GB47234
Apis mellifera
GB47234
I
0.733
L798_08800
Zootermopsis nevadensis
L798_08800
I
0.733
NV18787
Nasonia vitripennis
NV18787
I
0.733
Cflo_11261--XP_001120126.1_APIME
Camponotus floridanus
Cflo_11261--XP_001120126.1_APIME
I
0.733
Hsal_11632--XP_001120126.1_APIME
Harpegnathos saltator
Hsal_11632--XP_001120126.1_APIME
I
0.733
AMIN001256
Anopheles minimus
AMIN001256
I
0.733
MDOA002443
Musca domestica
MDOA002443
I
0.733
DAPPUDRAFT_8703
Daphnia pulex
DAPPUDRAFT_8703
I
0.700
EFV60876
Trichinella spiralis
EFV60876
I
0.700
ISCW019966
Ixodes scapularis
ISCW019966
I
0.700
SMAR003014
Strigamia maritima
SMAR003014
I
0.700
fgenesh2_pg.scaffold_196000035
Branchiostoma floridae
fgenesh2_pg.scaffold_196000035
I
0.700
fgenesh2_pg.scaffold_8000100
Branchiostoma floridae
fgenesh2_pg.scaffold_8000100
I
0.700
Sakowv30019106m.g
Saccoglossus kowalevskii
Sakowv30019106m.g
I
0.700
ALUE_0001693901
Ascaris lumbricoides
ALUE_0001693901
I
0.700
ANCDUO_13359
Ancylostoma duodenale
ANCDUO_13359
I
0.700
D917_02561
Trichinella nativa
D917_02561
I
0.700
D918_07967
Trichuris suis
D918_07967
I
0.700
SBAD_0000850501
Soboliphyme baturini
SBAD_0000850501
I
0.700
TMUE_s0092001100
Trichuris muris
TMUE_s0092001100
I
0.700
TTRE_0000468501
Trichuris trichiura
TTRE_0000468501
I
0.700