SRF (Choloepus hoffmanni)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 ENSCHOG00000008671 T253594_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		1.000 1.000
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		1.000 1.000
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		1.000 1.000
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		1.000 1.000
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		1.000 1.000
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		1.000 1.000
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		1.000 1.000
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		1.000 1.000
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		1.000 1.000
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		1.000 1.000
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		1.000 1.000
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		1.000 1.000
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		1.000 1.000
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		1.000 1.000
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		1.000 1.000
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		1.000 1.000
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		1.000 1.000
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		1.000 1.000
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		1.000 1.000
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		1.000 1.000
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		1.000 1.000
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		1.000 1.000
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.955 0.955
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.955 0.955
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.909 0.909
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.773 0.773
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.773 0.773
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.773 0.773
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.773 0.773
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.773 0.773
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.773 0.773
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.773 0.773
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCHOP00000007667 MADS box 153 176

Links

Other MADS box family TFs
Other Choloepus hoffmanni TFs

94 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DAPPUDRAFT_8703 Daphnia pulex DAPPUDRAFT_8703 I 1.000
EFV60876 Trichinella spiralis EFV60876 I 1.000
SRF Oryzias latipes ENSORLG00000013036 I 1.000
ENSXMAG00000018559 Xiphophorus maculatus ENSXMAG00000018559 I 1.000
ISCW019966 Ixodes scapularis ISCW019966 I 1.000
SMAR003014 Strigamia maritima SMAR003014 I 1.000
fgenesh2_pg.scaffold_196000035 Branchiostoma floridae fgenesh2_pg.scaffold_196000035 I 1.000
fgenesh2_pg.scaffold_8000100 Branchiostoma floridae fgenesh2_pg.scaffold_8000100 I 1.000
Sakowv30019106m.g Saccoglossus kowalevskii Sakowv30019106m.g I 1.000
D917_02561 Trichinella nativa D917_02561 I 1.000
D918_07967 Trichuris suis D918_07967 I 1.000
SBAD_0000850501 Soboliphyme baturini SBAD_0000850501 I 1.000
TMUE_s0092001100 Trichuris muris TMUE_s0092001100 I 1.000
TTRE_0000468501 Trichuris trichiura TTRE_0000468501 I 1.000
ACEP12187 Atta cephalotes ACEP12187 I 0.955
ENSCSAVG00000008682 Ciona savignyi ENSCSAVG00000008682 I 0.955
bs Drosophila melanogaster FBgn0004101 D 0.955
GA17433 Drosophila pseudoobscura FBgn0077446 I 0.955
GF11392 Drosophila ananassae FBgn0088432 I 0.955
GG22961 Drosophila erecta FBgn0115118 I 0.955
GH20989 Drosophila grimshawi FBgn0128451 I 0.955
GI21322 Drosophila mojavensis FBgn0144052 I 0.955
GL20046 Drosophila persimilis FBgn0157643 I 0.955
GM11854 Drosophila sechellia FBgn0166795 I 0.955
GD11852 Drosophila simulans FBgn0183591 I 0.955
GJ21595 Drosophila virilis FBgn0208714 I 0.955
GK22205 Drosophila willistoni FBgn0224190 I 0.955
GE14398 Drosophila yakuba FBgn0232006 I 0.955
GB47234 Apis mellifera GB47234 I 0.955
L798_08800 Zootermopsis nevadensis L798_08800 I 0.955
MESCA004860 Megaselia scalaris MESCA004860 I 0.955
NV18787 Nasonia vitripennis NV18787 I 0.955
SINV23963 Solenopsis invicta SINV23963 I 0.955
Cflo_11261--XP_001120126.1_APIME Camponotus floridanus Cflo_11261--XP_001120126.1_APIME I 0.955
Hsal_11632--XP_001120126.1_APIME Harpegnathos saltator Hsal_11632--XP_001120126.1_APIME I 0.955
CLEC013393 Cimex lectularius CLEC013393 I 0.955
HHAL001484-PA Halyomorpha halys HHAL001484-PA I 0.955
ACHR006794 Anopheles christyi ACHR006794 I 0.955
ACUA001543 Anopheles culicifacies ACUA001543 I 0.955
AEPI007009 Anopheles epiroticus AEPI007009 I 0.955
AFUN006149 Anopheles funestus AFUN006149 I 0.955
AMAM005702 Anopheles maculatus AMAM005702 I 0.955
AMIN001256 Anopheles minimus AMIN001256 I 0.955
MDOA002443 Musca domestica MDOA002443 I 0.955
CpipJ_CPIJ016459 Culex pipiens CpipJ_CPIJ016459 I 0.913
AGAP010511 Anopheles gambiae AGAP010511 I 0.913
CPIJ016459 Culex quinquefasciatus CPIJ016459 I 0.913
AARA006326 Anopheles arabiensis AARA006326 I 0.913
ACOM041695 Anopheles coluzzii ACOM041695 I 0.913
AFAF006302 Anopheles farauti AFAF006302 I 0.913
AMEC009624 Anopheles melas AMEC009624 I 0.913
AQUA001309 Anopheles quadriannulatus AQUA001309 I 0.913
CJA08385 Caenorhabditis japonica CJA08385 I 0.909
ALUE_0001693901 Ascaris lumbricoides ALUE_0001693901 I 0.909
ANCDUO_13359 Ancylostoma duodenale ANCDUO_13359 I 0.909
RSKR_0001102000 Rhabditophanes kr3021 RSKR_0001102000 I 0.909
BGIBMGA001382 Bombyx mori BGIBMGA001382 I 0.875
HMEL017831 Heliconius melpomene HMEL017831 I 0.875
KGM_22252 Danaus plexippus KGM_22252 I 0.875
LCUP011662 Lucilia cuprina LCUP011662 I 0.875
AATE005744 Anopheles atroparvus AATE005744 I 0.875
ASTEI07121 Anopheles stephensi ASTEI07121 I 0.875
ANCDUO_18278 Ancylostoma duodenale ANCDUO_18278 I 0.870
AAEL010925 Aedes aegypti AAEL010925 I 0.864
HelroG137972 Helobdella robusta HelroG137972 I 0.864
L596_g5274 Steinernema carpocapsae L596_g5274 I 0.864
L889_g24087 Steinernema feltiae L889_g24087 I 0.864
L892_g14520 Steinernema scapterisci L892_g14520 I 0.864
L893_g14743 Steinernema glaseri L893_g14743 I 0.864
L898_g9834 Steinernema monticolum L898_g9834 I 0.864
AALB009947 Anopheles albimanus AALB009947 I 0.840
LDEC007646 Leptinotarsa decemlineata LDEC007646 I 0.833
YQE_03076 Dendroctonus ponderosae YQE_03076 I 0.800
CpipJ_CPIJ008336 Culex pipiens CpipJ_CPIJ008336 I 0.778
CPIJ008336 Culex quinquefasciatus CPIJ008336 I 0.778
RPRC001752 Rhodnius prolixus RPRC001752 I 0.778
OFLC_0001346401 Onchocerca flexuosa OFLC_0001346401 I 0.741
RO3G_00948 Rhizopus oryzae RO3G_00948 I 0.727
SPPG_06208 Spizellomyces punctatus SPPG_06208 I 0.727
CFIO01_12657 Colletotrichum fioriniae CFIO01_12657 I 0.727
CH063_12904 Colletotrichum higginsianum CH063_12904 I 0.727
Cob_05053 Colletotrichum orbiculare Cob_05053 I 0.727
CSUB01_05290 Colletotrichum sublineola CSUB01_05290 I 0.727
DACRYDRAFT_57073 Dacryopinax sp DACRYDRAFT_57073 I 0.727
srfB Dictyostelium discoideum DDB_G0282835 I 0.727
GGTG_11623 Gaeumannomyces graminis GGTG_11623 I 0.727
GLOINDRAFT_82941 Rhizophagus irregularis GLOINDRAFT_82941 I 0.727
GLRG_02553 Colletotrichum graminicola GLRG_02553 I 0.727
MAPG_02274 Magnaporthe poae MAPG_02274 I 0.727
MGG_02773 Magnaporthe oryzae MGG_02773 I 0.727
PAXRUDRAFT_829045 Paxillus rubicundulus PAXRUDRAFT_829045 I 0.727
VDAG_01770 Verticillium dahliae VDAG_01770 I 0.727
SAKL0B11704g Lachancea kluyveri SAKL0B11704g I 0.727
PPAI006358 Phlebotomus papatasi PPAI006358 I 0.700