CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LCUP011662
(
Lucilia cuprina
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
LCUP011662
T259224_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
bs
M03915_2.00
Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN
SELEX
Nitta et al.(2015)
bs_1
0.917
0.917
bs
M03916_2.00
Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN
SELEX
Nitta et al.(2015)
bs_2
0.917
0.917
Srf
M00178_2.00
Mus musculus
NNDDWWHHNN
NNDDWWHHNN
PBM
Badis et al.(2009)
Srf_3509
0.875
0.875
unc-120
M00684_2.00
Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG
PBM
Narasimhan et al.(2015)
pTH10822
0.875
0.875
SRF
M03341_2.00
Homo sapiens
DCCWTATATGGT
ACCATATAWGGH
SELEX
Jolma et al.(2013)
SRF_1
0.875
0.875
SRF
M03342_2.00
Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA
SELEX
Jolma et al.(2013)
SRF_2
0.875
0.875
SRF
M05553_2.00
Homo sapiens
CCNTANAWGG
CCWTNTANGG
SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX
0.875
0.875
SRF
M07981_2.00
Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN
ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha
0.875
0.875
SRF
M07982_2.00
Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG
ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha
0.875
0.875
SRF
M07983_2.00
Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN
ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha
0.875
0.875
SRF
M07984_2.00
Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC
ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha
0.875
0.875
SRF
M09249_2.00
Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND
Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A
0.875
0.875
Srf
M09254_2.00
Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN
Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A
0.875
0.875
Srf
M09598_2.00
Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG
Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al.
0.875
0.875
SRF
M10947_2.00
Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK
Transfac
Matys et al.(2006)
V$SRF_01
0.875
0.875
SRF
M10948_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_02
0.875
0.875
SRF
M10949_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_03
0.875
0.875
SRF
M10950_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_09
0.875
0.875
SRF
M10951_2.00
Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH
Transfac
Matys et al.(2006)
V$SRF_C
0.875
0.875
SRF
M10952_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q3
0.875
0.875
SRF
M10953_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q4
0.875
0.875
SRF
M10954_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q5_01
0.875
0.875
SRF
M10955_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q5_02
0.875
0.875
SRF
M10956_2.00
Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV
Transfac
Matys et al.(2006)
V$SRF_Q6
0.875
0.875
SRF
M05554_2.00
Homo sapiens
CCNTAYAWGG
CCWTRTANGG
SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX
0.875
0.875
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
LCUP011662-PA
MADS box
176
199
YIDNKLRRYTTFSKRKTGIMKKNT
Links
Other
MADS box
family TFs
Other
Lucilia cuprina
TFs
185 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CLEC013393
Cimex lectularius
CLEC013393
I
0.958
HHAL001484-PA
Halyomorpha halys
HHAL001484-PA
I
0.958
CPIJ016459
Culex quinquefasciatus
CPIJ016459
I
0.957
CpipJ_CPIJ016459
Culex pipiens
CpipJ_CPIJ016459
I
0.957
HMEL017831
Heliconius melpomene
HMEL017831
I
0.917
GB47234
Apis mellifera
GB47234
I
0.917
GE14398
Drosophila yakuba
FBgn0232006
I
0.917
KGM_22252
Danaus plexippus
KGM_22252
I
0.917
CpipJ_CPIJ008336
Culex pipiens
CpipJ_CPIJ008336
I
0.917
SINV23963
Solenopsis invicta
SINV23963
I
0.917
NV18787
Nasonia vitripennis
NV18787
I
0.917
MESCA004860
Megaselia scalaris
MESCA004860
I
0.917
GK22205
Drosophila willistoni
FBgn0224190
I
0.917
GJ21595
Drosophila virilis
FBgn0208714
I
0.917
GG22961
Drosophila erecta
FBgn0115118
I
0.917
GF11392
Drosophila ananassae
FBgn0088432
I
0.917
GA17433
Drosophila pseudoobscura
FBgn0077446
I
0.917
GH20989
Drosophila grimshawi
FBgn0128451
I
0.917
GI21322
Drosophila mojavensis
FBgn0144052
I
0.917
GD11852
Drosophila simulans
FBgn0183591
I
0.917
GM11854
Drosophila sechellia
FBgn0166795
I
0.917
GL20046
Drosophila persimilis
FBgn0157643
I
0.917
Cflo_11261--XP_001120126.1_APIME
Camponotus floridanus
Cflo_11261--XP_001120126.1_APIME
I
0.917
Hsal_11632--XP_001120126.1_APIME
Harpegnathos saltator
Hsal_11632--XP_001120126.1_APIME
I
0.917
AFAF006302
Anopheles farauti
AFAF006302
I
0.917
AEPI007009
Anopheles epiroticus
AEPI007009
I
0.917
ADIR000345
Anopheles dirus
ADIR000345
N
0.917
AFUN006149
Anopheles funestus
AFUN006149
I
0.917
AMAM005702
Anopheles maculatus
AMAM005702
I
0.917
AQUA001309
Anopheles quadriannulatus
AQUA001309
I
0.917
AMIN001256
Anopheles minimus
AMIN001256
I
0.917
AMEC009624
Anopheles melas
AMEC009624
I
0.917
ACUA001543
Anopheles culicifacies
ACUA001543
I
0.917
ACOM041695
Anopheles coluzzii
ACOM041695
I
0.917
MDOA002443
Musca domestica
MDOA002443
I
0.917
bs
Drosophila melanogaster
FBgn0004101
D
0.917
PPAI006358
Phlebotomus papatasi
PPAI006358
I
0.917
AALB009947
Anopheles albimanus
AALB009947
I
0.917
AARA006326
Anopheles arabiensis
AARA006326
I
0.917
ACHR006794
Anopheles christyi
ACHR006794
I
0.917
AATE005744
Anopheles atroparvus
AATE005744
I
0.917
ASTEI07121
Anopheles stephensi
ASTEI07121
I
0.917
L798_08800
Zootermopsis nevadensis
L798_08800
I
0.917
ACEP12187
Atta cephalotes
ACEP12187
I
0.917
CPIJ008336
Culex quinquefasciatus
CPIJ008336
I
0.917
AGAP010511
Anopheles gambiae
AGAP010511
I
0.917
BGIBMGA001382
Bombyx mori
BGIBMGA001382
I
0.917
WUBG_06152
Wuchereria bancrofti
WUBG_06152
I
0.875
Bm3022
Brugia malayi
Bm3022
I
0.875
ACYPI002973
Acyrthosiphon pisum
ACYPI002973
I
0.875
ACAC_0000939001
Angiostrongylus cantonensis
ACAC_0000939001
I
0.875
ACOC_0000094701
Angiostrongylus costaricensis
ACOC_0000094701
I
0.875
ANCDUO_13359
Ancylostoma duodenale
ANCDUO_13359
I
0.875
ANCDUO_18278
Ancylostoma duodenale
ANCDUO_18278
I
0.875
ANCCEY_13649
Ancylostoma ceylanicum
ANCCEY_13649
I
0.875
ANCCEY_11374
Ancylostoma ceylanicum
ANCCEY_11374
I
0.875
ALUE_0001693901
Ascaris lumbricoides
ALUE_0001693901
I
0.875
ANCCAN_16750
Ancylostoma caninum
ANCCAN_16750
I
0.875
Bm7708
Brugia malayi
Bm7708
I
0.875
CBN00046
Caenorhabditis brenneri
CBN00046
I
0.875
fgenesh2_pg.scaffold_8000100
Branchiostoma floridae
fgenesh2_pg.scaffold_8000100
I
0.875
Sakowv30019106m.g
Saccoglossus kowalevskii
Sakowv30019106m.g
I
0.875
ENSLACG00000014404
Latimeria chalumnae
ENSLACG00000014404
I
0.875
Pvit_03053
Pogona vitticeps
Pvit_03053
I
0.875
ENSBTAP00000016981-D1
Bos grunniens
ENSBTAP00000016981-D1
I
0.875
EFV60876
Trichinella spiralis
EFV60876
I
0.875
DAPPUDRAFT_8703
Daphnia pulex
DAPPUDRAFT_8703
I
0.875
CRE29464
Caenorhabditis remanei
CRE29464
I
0.875
CBN02826
Caenorhabditis brenneri
CBN02826
I
0.875
ASIM_0002132201
Anisakis simplex
ASIM_0002132201
I
0.875
CJA08385
Caenorhabditis japonica
CJA08385
I
0.875
srf.L
Xenopus laevis
XB-GENE-864819
I
0.875
LDEC007646
Leptinotarsa decemlineata
LDEC007646
I
0.875
srf
Xenopus tropicalis
XB-GENE-482036
I
0.875
CBG12542
Caenorhabditis briggsae
CBG12542
I
0.875
ASU_11865
Ascaris suum
ASU_11865
I
0.875
RSKR_0001102000
Rhabditophanes kr3021
RSKR_0001102000
I
0.875
SBAD_0000850501
Soboliphyme baturini
SBAD_0000850501
I
0.875
scaffold2825-EXSNAP2012.1
Pristionchus exspectatus
scaffold2825-EXSNAP2012.1
I
0.875
PTRK_0001139200
Parastrongyloides trichosuri
PTRK_0001139200
I
0.875
OFLC_0001346401
Onchocerca flexuosa
OFLC_0001346401
I
0.875
nOo.2.0.1.g11137
Onchocerca ochengi
nOo.2.0.1.g11137
I
0.875
OESDEN_12192
Oesophagostomum dentatum
OESDEN_12192
I
0.875
scaffold690-EXSNAP2012.12
Pristionchus exspectatus
scaffold690-EXSNAP2012.12
I
0.875
snap_masked-nMf.1.1.scaf02542-processed-gene-0.2
Meloidogyne floridensis
snap_masked-nMf.1.1.scaf02542-processed-gene-0.2
N
0.875
TMUE_s0092001100
Trichuris muris
TMUE_s0092001100
I
0.875
TTRE_0000468501
Trichuris trichiura
TTRE_0000468501
I
0.875
TCLT_0000849901
Thelazia callipaeda
TCLT_0000849901
I
0.875
SVE_1017000
Strongyloides venezuelensis
SVE_1017000
I
0.875
SPAL_0000748100
Strongyloides papillosus
SPAL_0000748100
I
0.875
SSTP_0000932200
Strongyloides stercoralis
SSTP_0000932200
I
0.875
nLs.2.1.2.g09548
Litomosoides sigmodontis
nLs.2.1.2.g09548
I
0.875
NECAME_15797
Necator americanus
NECAME_15797
I
0.875
DICVIV_07203
Dictyocaulus viviparus
DICVIV_07203
I
0.875
DME_0000010001
Dracunculus medinensis
DME_0000010001
I
0.875
D918_07967
Trichuris suis
D918_07967
I
0.875
D917_02561
Trichinella nativa
D917_02561
I
0.875
ASU_14961
Ascaris suum
ASU_14961
I
0.875
BTMF_0000835601
Brugia timori
BTMF_0000835601
I
0.875
EEL_0000867301
Elaeophora elaphi
EEL_0000867301
I
0.875
EVEC_0001294401
Enterobius vermicularis
EVEC_0001294401
N
0.875
NBR_0001475101
Nippostrongylus brasiliensis
NBR_0001475101
I
0.875
nDi.2.2.2.g03920
Dirofilaria immitis
nDi.2.2.2.g03920
I
0.875
nAv.1.0.1.g08666
Acanthocheilonema viteae
nAv.1.0.1.g08666
I
0.875
HPBE_0000920601
Heligmosomoides bakeri
HPBE_0000920601
I
0.875
GPUH_0001673101
Gongylonema pulchrum
GPUH_0001673101
I
0.875
HCOI01934200
Haemonchus contortus
HCOI01934200
I
0.875
SRF
Anolis carolinensis
ENSACAG00000004798
I
0.875
fgenesh2_pg.scaffold_196000035
Branchiostoma floridae
fgenesh2_pg.scaffold_196000035
I
0.875
SRF
Tetraodon nigroviridis
ENSTNIG00000013420
I
0.875
srfa
Takifugu rubripes
ENSTRUG00000011448
I
0.875
SRF
Takifugu rubripes
ENSTRUG00000017531
I
0.875
srfa
Tetraodon nigroviridis
ENSTNIG00000002923
I
0.875
ENSSTOG00000014222
Ictidomys tridecemlineatus
ENSSTOG00000014222
I
0.875
Srf
Rattus norvegicus
ENSRNOG00000018232
I
0.875
SRF
Sus scrofa
ENSSSCG00000001661
I
0.875
SRF
Tursiops truncatus
ENSTTRG00000007017
I
0.875
ENSXMAG00000006964
Xiphophorus maculatus
ENSXMAG00000006964
I
0.875
SRF
Homo sapiens
ENSG00000112658
D
0.875
YQE_03076
Dendroctonus ponderosae
YQE_03076
I
0.875
SRF
Equus caballus
ENSECAG00000009068
I
0.875
SRF
Gasterosteus aculeatus
ENSGACG00000003778
I
0.875
srfa
Gasterosteus aculeatus
ENSGACG00000020002
I
0.875
ENSXMAG00000018559
Xiphophorus maculatus
ENSXMAG00000018559
I
0.875
ENSGMOG00000008883
Gadus morhua
ENSGMOG00000008883
I
0.875
SRF
Pteropus vampyrus
ENSPVAG00000008728
I
0.875
SRF
Pan troglodytes
ENSPTRG00000018189
I
0.875
ENSMPUG00000013090
Mustela putorius furo
ENSMPUG00000013090
I
0.875
Srf
Mus musculus
ENSMUSG00000015605
D
0.875
ENSNLEG00000004203
Nomascus leucogenys
ENSNLEG00000004203
I
0.875
SRF
Monodelphis domestica
ENSMODG00000018981
I
0.875
SRF
Macaca mulatta
ENSMMUG00000000033
I
0.875
ENSLOCG00000015887
Lepisosteus oculatus
ENSLOCG00000015887
I
0.875
ENSMICG00000008327
Microcebus murinus
ENSMICG00000008327
I
0.875
SRF
Oryctolagus cuniculus
ENSOCUG00000002892
I
0.875
SRF
Otolemur garnettii
ENSOGAG00000029623
I
0.875
ENSPFOG00000018770
Poecilia formosa
ENSPFOG00000018770
I
0.875
ENSPFOG00000022718
Poecilia formosa
ENSPFOG00000022718
I
0.875
ENSPPYG00000016633
Pongo abelii
ENSPPYG00000016633
I
0.875
ENSPANG00000006410
Papio anubis
ENSPANG00000006410
I
0.875
SRF
Oryzias latipes
ENSORLG00000013036
I
0.875
ENSONIG00000010161
Oreochromis niloticus
ENSONIG00000010161
I
0.875
ENSONIG00000010505
Oreochromis niloticus
ENSONIG00000010505
I
0.875
SRF
Dasypus novemcinctus
ENSDNOG00000014133
I
0.875
SRF
Felis catus
ENSFCAG00000025180
I
0.875
SRF
Choloepus hoffmanni
ENSCHOG00000008671
I
0.875
ENSAMXG00000001100
Astyanax mexicanus
ENSAMXG00000001100
I
0.875
SRF
Bos taurus
ENSBTAG00000012777
I
0.875
ISCW019966
Ixodes scapularis
ISCW019966
I
0.875
ENSAMXG00000003129
Astyanax mexicanus
ENSAMXG00000003129
I
0.875
LOAG_01601
Loa loa
LOAG_01601
I
0.875
SRF
Canis familiaris
ENSCAFG00000001829
I
0.875
srfb
Danio rerio
ENSDARG00000102867
I
0.875
ENSAMEG00000012452
Ailuropoda melanoleuca
ENSAMEG00000012452
I
0.875
Ppa-unc-120
Pristionchus pacificus
PPA14131
I
0.875
SMAR003014
Strigamia maritima
SMAR003014
I
0.875
SRF
Callithrix jacchus
ENSCJAG00000005223
I
0.875
ENSCSAG00000011622
Chlorocebus sabaeus
ENSCSAG00000011622
I
0.875
WBGene00243571
Onchocerca volvulus
WBGene00243571
I
0.875
unc-120
Caenorhabditis elegans
WBGene00006844
D
0.875
srfa
Danio rerio
ENSDARG00000053918
I
0.875
TC004911
Tribolium castaneum
TC004911
I
0.875
LotgiG59850
Lottia gigantea
LotgiG59850
I
0.833
ML154140a
Mnemiopsis leidyi
ML154140a
I
0.833
SPU_027774
Strongylocentrotus purpuratus
SPU_027774
I
0.833
NEMVEDRAFT_v1g164599
Nematostella vectensis
NEMVEDRAFT_v1g164599
I
0.833
CGI_10019446
Crassostrea gigas
CGI_10019446
I
0.833
L898_g9834
Steinernema monticolum
L898_g9834
I
0.833
CapteG221100
Capitella teleta
CapteG221100
I
0.833
AAEL010925
Aedes aegypti
AAEL010925
I
0.833
BGLB003854
Biomphalaria glabrata
BGLB003854
I
0.833
L596_g5274
Steinernema carpocapsae
L596_g5274
I
0.833
ENSCSAVG00000008682
Ciona savignyi
ENSCSAVG00000008682
I
0.833
L892_g14520
Steinernema scapterisci
L892_g14520
I
0.833
L893_g14743
Steinernema glaseri
L893_g14743
I
0.833
L889_g24087
Steinernema feltiae
L889_g24087
I
0.833
RPRC001752
Rhodnius prolixus
RPRC001752
I
0.815
srf
Ciona intestinalis
ENSCING00000018042
I
0.792
tetur02g05030
Tetranychus urticae
tetur02g05030
I
0.750
SRF
Procavia capensis
ENSPCAG00000009376
I
0.750
HelroG137972
Helobdella robusta
HelroG137972
I
0.750
RO3G_00948
Rhizopus oryzae
RO3G_00948
I
0.708
GLOINDRAFT_82941
Rhizophagus irregularis
GLOINDRAFT_82941
I
0.708
KAFR_0B05280
Kazachstania africana
KAFR_0B05280
I
0.708
SPPG_06208
Spizellomyces punctatus
SPPG_06208
I
0.708