scaffold_202161.1 (Arabidopsis lyrata)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 scaffold_202161.1 T256114_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_202161.1 MADS box 53 100

Links

Other MADS box family TFs
Other Arabidopsis lyrata TFs

12 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30128.m009035 Ricinus communis 30128.m009035 I
ANAC041 Arabidopsis lyrata fgenesh2_kg.4__1354__AT2G33480.1 I
ANAC083 Arabidopsis lyrata scaffold_601328.1 I
ANAC083 Vitis vinifera VIT_01s0146g00280 I
Aquca_011_00050 Aquilegia coerulea Aquca_011_00050 I
Aquca_021_00051 Aquilegia coerulea Aquca_021_00051 I
Bo2g011120 Brassica oleracea Bo2g011120 I
Bo3g009040 Brassica oleracea Bo3g009040 I
Bo4g043670 Brassica oleracea Bo4g043670 I
Bo4g181990 Brassica oleracea Bo4g181990 I
Bo9g168950 Brassica oleracea Bo9g168950 I
Bostr.23794s0753 Boechera stricta Bostr.23794s0753 I
Bostr.2902s0053 Boechera stricta Bostr.2902s0053 I
Bra005492 Brassica rapa Bra005492 I
Bra006186 Brassica rapa Bra006186 I
Bra008849 Brassica rapa Bra008849 I
Bra021856 Brassica rapa Bra021856 I
Bra023395 Brassica rapa Bra023395 I
Cagra.0301s0034 Capsella grandiflora Cagra.0301s0034 N
Cagra.0596s0010 Capsella grandiflora Cagra.0596s0010 I
Carubv10002548m.g Capsella rubella Carubv10002548m.g I
Carubv10023833m.g Capsella rubella Carubv10023833m.g N
cassava12891.valid.m1 Manihot esculenta cassava12891.valid.m1 I
chr1.CM0017.80.nc Lotus japonicus chr1.CM0017.80.nc I
Ciclev10032547m.g Citrus clementina Ciclev10032547m.g I
Cla001517 Citrullus lanatus Cla001517 I
Cucsa.349370 Cucumis sativus Cucsa.349370 I
Eucgr.B03537 Eucalyptus grandis Eucgr.B03537 I
Eucgr.H03387 Eucalyptus grandis Eucgr.H03387 I
evm.TU.supercontig_99.63 Carica papaya evm.TU.supercontig_99.63 I
gene06460-v1.0-hybrid Fragaria vesca gene06460-v1.0-hybrid N
GLYMA08G47520 Glycine max GLYMA08G47520 I
GLYMA18G53954 Glycine max GLYMA18G53954 I
Gorai.005G195300 Gossypium raimondii Gorai.005G195300 I
Gorai.012G125500 Gossypium raimondii Gorai.012G125500 I
GSMUA_Achr10G11910_001 Musa acuminata GSMUA_Achr10G11910_001 N
GSMUA_Achr6G16560_001 Musa acuminata GSMUA_Achr6G16560_001 N
Lus10001809.g Linum usitatissimum Lus10001809.g I
Lus10002581.g Linum usitatissimum Lus10002581.g I
MDP0000126517 Malus domestica MDP0000126517 I
MDP0000130123 Malus domestica MDP0000130123 I
MDP0000130686 Malus domestica MDP0000130686 N
MDP0000147080 Malus domestica MDP0000147080 I
MTR_7g005280 Medicago truncatula MTR_7g005280 I
NAC041 Arabidopsis thaliana AT2G33480 I
NAC083 Arabidopsis thaliana AT5G13180 D
orange1.1g030727m.g Citrus sinensis orange1.1g030727m.g I
PK12461.1 Cannabis sativa PK12461.1 I
Pm007070 Prunus mume Pm007070 I
POPTR_0001s13380 Populus trichocarpa POPTR_0001s13380 I
POPTR_0003s16490 Populus trichocarpa POPTR_0003s16490 I
PRUPE_ppa010222mg Prunus persica PRUPE_ppa010222mg I
SapurV1A.0173s0020 Salix purpurea SapurV1A.0173s0020 I
SapurV1A.0453s0210 Salix purpurea SapurV1A.0453s0210 I
TCM_008477 Theobroma cacao TCM_008477 I
TCM_014713 Theobroma cacao TCM_014713 I
Thhalv10014495m.g Eutrema salsugineum Thhalv10014495m.g I
Thhalv10017152m.g Eutrema salsugineum Thhalv10017152m.g I