Ciclev10006519m.g (Citrus clementina)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Ciclev10006519m.g T257860_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.854 0.854
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10006519m MADS box 10 58

Links

Other MADS box family TFs
Other Citrus clementina TFs

107 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29333.m001063 Ricinus communis 29333.m001063 N 0.000
cassava32147.m1 Manihot esculenta cassava32147.m1 N 0.000
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N 0.000
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.896
GSMUA_Achr3G05500_001 Musa acuminata GSMUA_Achr3G05500_001 I 0.000
MDP0000925348 Malus domestica MDP0000925348 I 0.833
mgf026186m Mimulus guttatus mgf026186m I 0.729
orange1.1g038848m.g Citrus sinensis orange1.1g038848m.g N 0.000
Pm004396 Prunus mume Pm004396 I 0.867
POPTR_0006s21630 Populus trichocarpa POPTR_0006s21630 N 0.000
POPTR_0016s06850 Populus trichocarpa POPTR_0016s06850 N 0.000
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.867
SapurV1A.0258s0020 Salix purpurea SapurV1A.0258s0020 N 0.000
SapurV1A.0980s0020 Salix purpurea SapurV1A.0980s0020 N 0.000
SapurV1A.1209s0030 Salix purpurea SapurV1A.1209s0030 N 0.000
TCM_022993 Theobroma cacao TCM_022993 N 0.000
TCM_023006 Theobroma cacao TCM_023006 N 0.000
TCM_023041 Theobroma cacao TCM_023041 N 0.000