Cla012920 (Citrullus lanatus)
MBD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01429 (MBD) IPR001739 Cla012920 T261248_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cla012920 MBD 22 95

Links

Other MBD family TFs
Other Citrullus lanatus TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29844.m003312 Ricinus communis 29844.m003312 N 0.000
29904.m002956 Ricinus communis 29904.m002956 N 0.000
30054.m000819 Ricinus communis 30054.m000819 N 0.000
30128.m008737 Ricinus communis 30128.m008737 N 0.000
30169.m006534 Ricinus communis 30169.m006534 N 0.000
AMTR_s00015p00239460 Amborella trichopoda AMTR_s00015p00239460 N 0.000
AMTR_s00089p00043950 Amborella trichopoda AMTR_s00089p00043950 N 0.000
Aquca_005_00478 Aquilegia coerulea Aquca_005_00478 N 0.000
Aquca_034_00130 Aquilegia coerulea Aquca_034_00130 N 0.000
Aquca_037_00084 Aquilegia coerulea Aquca_037_00084 N 0.000
Aquca_135_00008 Aquilegia coerulea Aquca_135_00008 N 0.000
AT1G22490 Arabidopsis thaliana AT1G22490 N 0.000
BGIOSGA006748 Oryza indica BGIOSGA006748 N 0.000
BGIOSGA023024 Oryza indica BGIOSGA023024 N 0.000
BGIOSGA030936 Oryza indica BGIOSGA030936 N 0.000
BHLH96 Arabidopsis thaliana AT1G72210 N 0.000
Bo1g101110 Brassica oleracea Bo1g101110 N 0.000
Bo1g150080 Brassica oleracea Bo1g150080 N 0.000
Bo2g046020 Brassica oleracea Bo2g046020 N 0.000
Bo3g060420 Brassica oleracea Bo3g060420 N 0.000
Bo3g082010 Brassica oleracea Bo3g082010 N 0.000
Bo5g038570 Brassica oleracea Bo5g038570 N 0.000
Bo5g144750 Brassica oleracea Bo5g144750 N 0.000
Bo6g092570 Brassica oleracea Bo6g092570 N 0.000
Bo6g114730 Brassica oleracea Bo6g114730 N 0.000
Bo7g037540 Brassica oleracea Bo7g037540 N 0.000
Bo7g057920 Brassica oleracea Bo7g057920 N 0.000
Bo8g071490 Brassica oleracea Bo8g071490 N 0.000
Bo9g110960 Brassica oleracea Bo9g110960 N 0.000
Bostr.10273s0131 Boechera stricta Bostr.10273s0131 N 0.000
Bostr.12659s0103 Boechera stricta Bostr.12659s0103 N 0.000
Bostr.19424s0222 Boechera stricta Bostr.19424s0222 N 0.000
Bostr.2570s0048 Boechera stricta Bostr.2570s0048 N 0.000
Bostr.26833s0957 Boechera stricta Bostr.26833s0957 N 0.000
Bra001183 Brassica rapa Bra001183 N 0.000
Bra001929 Brassica rapa Bra001929 N 0.000
Bra003073 Brassica rapa Bra003073 N 0.000
Bra003886 Brassica rapa Bra003886 N 0.000
Bra012329 Brassica rapa Bra012329 N 0.000
Bra016080 Brassica rapa Bra016080 N 0.000
Bra016377 Brassica rapa Bra016377 N 0.000
Bra020775 Brassica rapa Bra020775 N 0.000
Bra022638 Brassica rapa Bra022638 N 0.000
Bra028357 Brassica rapa Bra028357 N 0.000
Bra029088 Brassica rapa Bra029088 N 0.000
Bra040234 Brassica rapa Bra040234 N 0.000
Bra040856 Brassica rapa Bra040856 N 0.000
BRADI1G38650 Brachypodium distachyon BRADI1G38650 N 0.000
BRADI3G09670 Brachypodium distachyon BRADI3G09670 N 0.000
Cagra.0026s0026 Capsella grandiflora Cagra.0026s0026 N 0.000
Cagra.0084s0068 Capsella grandiflora Cagra.0084s0068 N 0.000
Cagra.0114s0053 Capsella grandiflora Cagra.0114s0053 N 0.000
Cagra.1772s0035 Capsella grandiflora Cagra.1772s0035 N 0.000
Cagra.4006s0007 Capsella grandiflora Cagra.4006s0007 N 0.000
Carubv10011476m.g Capsella rubella Carubv10011476m.g N 0.000
Carubv10012751m.g Capsella rubella Carubv10012751m.g N 0.000
Carubv10013821m.g Capsella rubella Carubv10013821m.g N 0.000
Carubv10020657m.g Capsella rubella Carubv10020657m.g N 0.000
Carubv10026630m.g Capsella rubella Carubv10026630m.g N 0.000
cassava11522.m1 Manihot esculenta cassava11522.m1 N 0.000
cassava13431.valid.m1 Manihot esculenta cassava13431.valid.m1 N 0.000
cassava19507.valid.m1 Manihot esculenta cassava19507.valid.m1 N 0.000
cassava22781.valid.m1 Manihot esculenta cassava22781.valid.m1 N 0.000
cassava27750.m1 Manihot esculenta cassava27750.m1 N 0.000
cassava27856.m1 Manihot esculenta cassava27856.m1 N 0.000
cassava31098.valid.m1 Manihot esculenta cassava31098.valid.m1 N 0.000
cassava32469.m1 Manihot esculenta cassava32469.m1 N 0.000
cassava3377.m1 Manihot esculenta cassava3377.m1 N 0.000
cassava35271.valid.m1 Manihot esculenta cassava35271.valid.m1 N 0.000
cassava7222.valid.m1 Manihot esculenta cassava7222.valid.m1 N 0.000
Ca_01181 Cicer arietinum Ca_01181 N 0.000
Ca_03951 Cicer arietinum Ca_03951 N 0.000
Ca_12363 Cicer arietinum Ca_12363 N 0.000
Ca_13080 Cicer arietinum Ca_13080 N 0.000
Ca_16010 Cicer arietinum Ca_16010 N 0.000
chr1.CM0544.580.nd Lotus japonicus chr1.CM0544.580.nd N 0.000
chr1.LjT16B05.110.nd Lotus japonicus chr1.LjT16B05.110.nd N 0.000
chr1.LjT40H13.220.nd Lotus japonicus chr1.LjT40H13.220.nd N 0.000
chr5.CM0211.190.nc Lotus japonicus chr5.CM0211.190.nc N 0.000
chr6.CM0139.250.nd Lotus japonicus chr6.CM0139.250.nd N 0.000
chr6.CM0738.340.nd Lotus japonicus chr6.CM0738.340.nd N 0.000
Ciclev10001811m.g Citrus clementina Ciclev10001811m.g N 0.000
Ciclev10005031m.g Citrus clementina Ciclev10005031m.g N 0.000
Ciclev10005947m.g Citrus clementina Ciclev10005947m.g N 0.000
Ciclev10007150m.g Citrus clementina Ciclev10007150m.g N 0.000
Cla004300 Citrullus lanatus Cla004300 N 0.000
Cla005338 Citrullus lanatus Cla005338 N 0.000
Cla016479 Citrullus lanatus Cla016479 N 0.000
Cla020173 Citrullus lanatus Cla020173 N 0.000
Cla021744 Citrullus lanatus Cla021744 N 0.000
Cla022458 Citrullus lanatus Cla022458 N 0.000
Cucsa.012930 Cucumis sativus Cucsa.012930 N 0.000
Cucsa.091670 Cucumis sativus Cucsa.091670 N 0.000
Cucsa.160250 Cucumis sativus Cucsa.160250 N 0.000
Cucsa.163550 Cucumis sativus Cucsa.163550 N 0.000
Cucsa.256420 Cucumis sativus Cucsa.256420 N 0.000
Cucsa.313010 Cucumis sativus Cucsa.313010 N 0.000
Eucgr.A02667 Eucalyptus grandis Eucgr.A02667 N 0.000
Eucgr.B00048 Eucalyptus grandis Eucgr.B00048 N 0.000
Eucgr.E00273 Eucalyptus grandis Eucgr.E00273 N 0.000
Eucgr.H03591 Eucalyptus grandis Eucgr.H03591 N 0.000
Eucgr.H04468 Eucalyptus grandis Eucgr.H04468 N 0.000
evm.TU.supercontig_3.51 Carica papaya evm.TU.supercontig_3.51 N 0.000
evm.TU.supercontig_36.191 Carica papaya evm.TU.supercontig_36.191 N 0.000
evm.TU.supercontig_48.15 Carica papaya evm.TU.supercontig_48.15 N 0.000
evm.TU.supercontig_59.132 Carica papaya evm.TU.supercontig_59.132 N 0.000
FAMA Arabidopsis thaliana AT3G24140 N 0.000
fgenesh1_pg.C_scaffold_1002057 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1002057 N 0.000
FMA Arabidopsis lyrata scaffold_302925.1 N 0.000
FMA Vitis vinifera VIT_05s0029g00050 N 0.000
gene02199-v1.0-hybrid Fragaria vesca gene02199-v1.0-hybrid N 0.000
gene06093-v1.0-hybrid Fragaria vesca gene06093-v1.0-hybrid N 0.000
gene12030-v1.0-hybrid Fragaria vesca gene12030-v1.0-hybrid N 0.000
gene22289-v1.0-hybrid Fragaria vesca gene22289-v1.0-hybrid N 0.000
GLYMA01G23230 Glycine max GLYMA01G23230 N 0.000
GLYMA02G14290 Glycine max GLYMA02G14290 N 0.000
GLYMA02G37313 Glycine max GLYMA02G37313 N 0.000
GLYMA03G39990 Glycine max GLYMA03G39990 N 0.000
GLYMA04G10630 Glycine max GLYMA04G10630 N 0.000
GLYMA04G41710 Glycine max GLYMA04G41710 N 0.000
GLYMA06G10470 Glycine max GLYMA06G10470 N 0.000
GLYMA06G13081 Glycine max GLYMA06G13081 N 0.000
GLYMA06G35330 Glycine max GLYMA06G35330 N 0.000
GLYMA08G36590 Glycine max GLYMA08G36590 N 0.000
GLYMA10G29760 Glycine max GLYMA10G29760 N 0.000
GLYMA13G08740 Glycine max GLYMA13G08740 N 0.000
GLYMA13G27880 Glycine max GLYMA13G27880 N 0.000
GLYMA14G35560 Glycine max GLYMA14G35560 N 0.000
GLYMA15G11130 Glycine max GLYMA15G11130 N 0.000
GLYMA19G42520 Glycine max GLYMA19G42520 N 0.000
GLYMA20G37550 Glycine max GLYMA20G37550 N 0.000
Gorai.006G054300 Gossypium raimondii Gorai.006G054300 N 0.000
Gorai.006G217200 Gossypium raimondii Gorai.006G217200 N 0.000
Gorai.008G225800 Gossypium raimondii Gorai.008G225800 N 0.000
Gorai.008G270700 Gossypium raimondii Gorai.008G270700 N 0.000
Gorai.011G159100 Gossypium raimondii Gorai.011G159100 N 0.000
GRMZM2G045109 Zea mays GRMZM2G045109 N 0.000
GRMZM2G064638 Zea mays GRMZM2G064638 N 0.000
GRMZM2G082586 Zea mays GRMZM2G082586 N 0.000
GRMZM2G085751 Zea mays GRMZM2G085751 N 0.000
GRMZM2G417164 Zea mays GRMZM2G417164 N 0.000
GSMUA_Achr10G01060_001 Musa acuminata GSMUA_Achr10G01060_001 N 0.000
GSMUA_Achr10G30300_001 Musa acuminata GSMUA_Achr10G30300_001 N 0.000
GSMUA_Achr5G06780_001 Musa acuminata GSMUA_Achr5G06780_001 N 0.000
GSMUA_Achr7G12790_001 Musa acuminata GSMUA_Achr7G12790_001 N 0.000
GSMUA_Achr7G21110_001 Musa acuminata GSMUA_Achr7G21110_001 N 0.000
GSMUA_Achr7G21190_001 Musa acuminata GSMUA_Achr7G21190_001 N 0.000
GSMUA_Achr8G17650_001 Musa acuminata GSMUA_Achr8G17650_001 N 0.000
GSMUA_Achr8G19870_001 Musa acuminata GSMUA_Achr8G19870_001 N 0.000
LPERR02G09400 Leersia perrieri LPERR02G09400 N 0.000
LPERR05G23890 Leersia perrieri LPERR05G23890 N 0.000
LPERR06G13950 Leersia perrieri LPERR06G13950 N 0.000
Lus10000332.g Linum usitatissimum Lus10000332.g N 0.000
Lus10001066.g Linum usitatissimum Lus10001066.g N 0.000
Lus10007139.g Linum usitatissimum Lus10007139.g N 0.000
Lus10014938.g Linum usitatissimum Lus10014938.g N 0.000
Lus10016680.g Linum usitatissimum Lus10016680.g N 0.000
Lus10029950.g Linum usitatissimum Lus10029950.g N 0.000
Lus10039328.g Linum usitatissimum Lus10039328.g N 0.000
MDP0000131133 Malus domestica MDP0000131133 N 0.000
MDP0000205030 Malus domestica MDP0000205030 N 0.000
MDP0000267178 Malus domestica MDP0000267178 N 0.000
MDP0000318772 Malus domestica MDP0000318772 N 0.000
MDP0000646823 Malus domestica MDP0000646823 N 0.000
MDP0000672131 Malus domestica MDP0000672131 N 0.000
MDP0000944210 Malus domestica MDP0000944210 N 0.000
mgf011108m Mimulus guttatus mgf011108m N 0.000
mgf014552m Mimulus guttatus mgf014552m N 0.000
mgf015694m Mimulus guttatus mgf015694m N 0.000
MLOC_21759 Hordeum vulgare MLOC_21759 N 0.000
MLOC_54435 Hordeum vulgare MLOC_54435 N 0.000
MTR_0194s0050 Medicago truncatula MTR_0194s0050 N 0.000
MTR_1g028470 Medicago truncatula MTR_1g028470 N 0.000
MTR_2g022280 Medicago truncatula MTR_2g022280 N 0.000
MTR_3g090850 Medicago truncatula MTR_3g090850 N 0.000
MTR_3g099620 Medicago truncatula MTR_3g099620 N 0.000
MTR_5g064950 Medicago truncatula MTR_5g064950 N 0.000
MTR_7g113830 Medicago truncatula MTR_7g113830 N 0.000
MTR_8g066770 Medicago truncatula MTR_8g066770 N 0.000
MUTE Arabidopsis thaliana AT3G06120 N 0.000
MUTE Arabidopsis lyrata scaffold_300691.1 N 0.000
MUTE Vitis vinifera VIT_05s0020g02700 N 0.000
OB02G19900 Oryza brachyantha OB02G19900 N 0.000
OB05G35750 Oryza brachyantha OB05G35750 N 0.000
OB09G19960 Oryza brachyantha OB09G19960 N 0.000
OBART02G11110 Oryza barthii OBART02G11110 N 0.000
OBART06G16920 Oryza barthii OBART06G16920 N 0.000
OGLUM02G11060 Oryza glumaepatula OGLUM02G11060 N 0.000
OGLUM06G17990 Oryza glumaepatula OGLUM06G17990 N 0.000
OLONG_015104 Oryza longistaminata OLONG_015104 N 0.000
OMERI02G11850 Oryza meridionalis OMERI02G11850 N 0.000
OMERI06G17780 Oryza meridionalis OMERI06G17780 N 0.000
OMERI09G10430 Oryza meridionalis OMERI09G10430 N 0.000
ONIVA02G12460 Oryza nivara ONIVA02G12460 N 0.000
ONIVA06G19730 Oryza nivara ONIVA06G19730 N 0.000
ONIVA09G13890 Oryza nivara ONIVA09G13890 N 0.000
OPUNC02G09860 Oryza punctata OPUNC02G09860 N 0.000
OPUNC06G15310 Oryza punctata OPUNC06G15310 N 0.000
OPUNC09G11790 Oryza punctata OPUNC09G11790 N 0.000
orange1.1g014477m.g Citrus sinensis orange1.1g014477m.g N 0.000
orange1.1g020210m.g Citrus sinensis orange1.1g020210m.g N 0.000
orange1.1g036531m.g Citrus sinensis orange1.1g036531m.g N 0.000
orange1.1g042904m.g Citrus sinensis orange1.1g042904m.g N 0.000
ORGLA02G0100500 Oryza glaberrima ORGLA02G0100500 N 0.000
ORGLA06G0140300 Oryza glaberrima ORGLA06G0140300 N 0.000
ORGLA09G0101900 Oryza glaberrima ORGLA09G0101900 N 0.000
ORUFI02G11080 Oryza rufipogon ORUFI02G11080 N 0.000
ORUFI06G17910 Oryza rufipogon ORUFI06G17910 N 0.000
ORUFI09G14410 Oryza rufipogon ORUFI09G14410 N 0.000
OS02G0257500 Oryza sativa OS02G0257500 N 0.000
OS06G0526100 Oryza sativa OS06G0526100 N 0.000
OS09G0468700 Oryza sativa OS09G0468700 N 0.000
Pavir.Aa02723 Panicum virgatum Pavir.Aa02723 N 0.000
Pavir.Ab01030 Panicum virgatum Pavir.Ab01030 N 0.000
Pavir.Bb02386 Panicum virgatum Pavir.Bb02386 N 0.000
Pavir.Da00918 Panicum virgatum Pavir.Da00918 N 0.000
Pavir.Db01402 Panicum virgatum Pavir.Db01402 N 0.000
Pavir.Ea00071 Panicum virgatum Pavir.Ea00071 N 0.000
Pavir.J22933 Panicum virgatum Pavir.J22933 N 0.000
PDK_20s1314901g001 Phoenix dactylifera PDK_20s1314901g001 N 0.000
PGSC0003DMG400009101 Solanum tuberosum PGSC0003DMG400009101 N 0.000
PGSC0003DMG400015760 Solanum tuberosum PGSC0003DMG400015760 N 0.000
PGSC0003DMG400017540 Solanum tuberosum PGSC0003DMG400017540 N 0.000
PGSC0003DMG400028578 Solanum tuberosum PGSC0003DMG400028578 N 0.000
PGSC0003DMG400029634 Solanum tuberosum PGSC0003DMG400029634 N 0.000
PK01904.1 Cannabis sativa PK01904.1 N 0.000
PK04856.1 Cannabis sativa PK04856.1 N 0.000
PK14736.1 Cannabis sativa PK14736.1 N 0.000
PK18533.1 Cannabis sativa PK18533.1 N 0.000
PK21294.1 Cannabis sativa PK21294.1 N 0.000
PK28391.1 Cannabis sativa PK28391.1 N 0.000
Pm003380 Prunus mume Pm003380 N 0.000
Pm004489 Prunus mume Pm004489 N 0.000
Pm008014 Prunus mume Pm008014 N 0.000
Pm009474 Prunus mume Pm009474 N 0.000
Pm019784 Prunus mume Pm019784 N 0.000
Pm023207 Prunus mume Pm023207 N 0.000
POPTR_0001s32160 Populus trichocarpa POPTR_0001s32160 N 0.000
POPTR_0002s10230 Populus trichocarpa POPTR_0002s10230 N 0.000
POPTR_0005s04160 Populus trichocarpa POPTR_0005s04160 N 0.000
POPTR_0008s20720 Populus trichocarpa POPTR_0008s20720 N 0.000
POPTR_0012s01370 Populus trichocarpa POPTR_0012s01370 N 0.000
POPTR_0013s02680 Populus trichocarpa POPTR_0013s02680 N 0.000
POPTR_0015s06160 Populus trichocarpa POPTR_0015s06160 N 0.000
POPTR_0017s08160 Populus trichocarpa POPTR_0017s08160 N 0.000
PRUPE_ppa009461mg Prunus persica PRUPE_ppa009461mg N 0.000
PRUPE_ppa011095mg Prunus persica PRUPE_ppa011095mg N 0.000
PRUPE_ppa015055mg Prunus persica PRUPE_ppa015055mg N 0.000
PRUPE_ppa017746mg Prunus persica PRUPE_ppa017746mg N 0.000
PRUPE_ppa019299mg Prunus persica PRUPE_ppa019299mg N 0.000
PRUPE_ppa020429mg Prunus persica PRUPE_ppa020429mg N 0.000
SapurV1A.0022s0230 Salix purpurea SapurV1A.0022s0230 N 0.000
SapurV1A.0092s0130 Salix purpurea SapurV1A.0092s0130 N 0.000
SapurV1A.0377s0010 Salix purpurea SapurV1A.0377s0010 N 0.000
SapurV1A.0462s0070 Salix purpurea SapurV1A.0462s0070 N 0.000
SapurV1A.0613s0120 Salix purpurea SapurV1A.0613s0120 N 0.000
SapurV1A.1043s0040 Salix purpurea SapurV1A.1043s0040 N 0.000
SapurV1A.1055s0160 Salix purpurea SapurV1A.1055s0160 N 0.000
SapurV1A.1124s0170 Salix purpurea SapurV1A.1124s0170 N 0.000
SapurV1A.1227s0030 Salix purpurea SapurV1A.1227s0030 N 0.000
Sb02g027210 Sorghum bicolor Sb02g027210 N 0.000
Sb04g009390 Sorghum bicolor Sb04g009390 N 0.000
Sb09g030930 Sorghum bicolor Sb09g030930 N 0.000
Sb10g020490 Sorghum bicolor Sb10g020490 N 0.000
SELMODRAFT_410402 Selaginella moellendorffii SELMODRAFT_410402 N 0.000
SELMODRAFT_428659 Selaginella moellendorffii SELMODRAFT_428659 N 0.000
SELMODRAFT_430716 Selaginella moellendorffii SELMODRAFT_430716 N 0.000
SELMODRAFT_451148 Selaginella moellendorffii SELMODRAFT_451148 N 0.000
Si004438m.g Setaria italica Si004438m.g N 0.000
Si006640m.g Setaria italica Si006640m.g N 0.000
Si013925m.g Setaria italica Si013925m.g N 0.000
Si017482m.g Setaria italica Si017482m.g N 0.000
Solyc01g080050.2 Solanum lycopersicum Solyc01g080050.2 N 0.000
Solyc03g007410.2 Solanum lycopersicum Solyc03g007410.2 N 0.000
Solyc05g053660.1 Solanum lycopersicum Solyc05g053660.1 N 0.000
Solyc08g076820.2 Solanum lycopersicum Solyc08g076820.2 N 0.000
Solyc09g091760.1 Solanum lycopersicum Solyc09g091760.1 N 0.000
SPCH Arabidopsis lyrata Al_scaffold_0008_1712 N 0.000
SPCH Arabidopsis thaliana AT5G53210 N 0.000
SPCH Vitis vinifera VIT_16s0050g02500 N 0.000
TCM_015345 Theobroma cacao TCM_015345 N 0.000
TCM_015694 Theobroma cacao TCM_015694 N 0.000
TCM_020336 Theobroma cacao TCM_020336 N 0.000
TCM_020520 Theobroma cacao TCM_020520 N 0.000
TCM_026599 Theobroma cacao TCM_026599 N 0.000
TCM_034439 Theobroma cacao TCM_034439 N 0.000
Thhalv10002558m.g Eutrema salsugineum Thhalv10002558m.g N 0.000
Thhalv10009836m.g Eutrema salsugineum Thhalv10009836m.g N 0.000
Thhalv10013877m.g Eutrema salsugineum Thhalv10013877m.g N 0.000
Thhalv10018867m.g Eutrema salsugineum Thhalv10018867m.g N 0.000
Thhalv10022251m.g Eutrema salsugineum Thhalv10022251m.g N 0.000
Traes_5BL_DA72CE20D Triticum aestivum Traes_5BL_DA72CE20D N 0.000
Traes_7DL_1717A9083 Triticum aestivum Traes_7DL_1717A9083 N 0.000
TRIUR3_09788 Triticum urartu TRIUR3_09788 N 0.000
VIT_14s0128g00110 Vitis vinifera VIT_14s0128g00110 N 0.000
VIT_18s0001g06650 Vitis vinifera VIT_18s0001g06650 N 0.000