Bo1g102190 (Brassica oleracea)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bo1g102190 T267094_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB15
M07084_2.00 		Arabidopsis thaliana
NNNHNNHHNHHYCACCWAMYH
DRKTWGGTGRDDNDDNNDNNN		 Dap-seq
OMalley et al.(2016)
ATY19_col_a 		0.862 0.957
MYB15
M02699_2.00 		Arabidopsis thaliana
CCACCTACCSBBG
CVVSGGTAGGTGG		 SELEX
Mathelier et al.(2014)
MA0574.1 		0.862 0.957
MYB15
M11041_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB15_01 		0.862 0.957
MYB15
M11042_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB15_Q2 		0.862 0.957
MYB58
M07005_2.00 		Arabidopsis thaliana
NNYYYACCWAMCHHH
DDDGKTWGGTRRRNN		 Dap-seq
OMalley et al.(2016)
MYB58_col_a 		0.723 0.774
MYB58
M07006_2.00 		Arabidopsis thaliana
HNNYHYACCWAMCHHHNNNNH
DNNNNDDDGKTWGGTRDRNND		 Dap-seq
OMalley et al.(2016)
MYB58_colamp_a 		0.723 0.774
ATMYB13
M06999_2.00 		Arabidopsis thaliana
HYCACCWACCHHHNH
DNDDDGGTWGGTGRD		 Dap-seq
OMalley et al.(2016)
MYB13_col_a 		0.718 0.828
ATMYB13
M07000_2.00 		Arabidopsis thaliana
BYCACCWACCHHHNNHNN
NNDNNDDDGGTWGGTGRV		 Dap-seq
OMalley et al.(2016)
MYB13_colamp_a 		0.718 0.828
AtMYB10
M07081_2.00 		Arabidopsis thaliana
YYYACCWAMCHHHHNH
DNDDDDGKTWGGTRRR		 Dap-seq
OMalley et al.(2016)
MYB10_col_a 		0.683 0.720
AtMYB10
M07082_2.00 		Arabidopsis thaliana
NYYYACCWAMCHHH
DDDGKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB10_colamp_a 		0.683 0.720
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo1g102190.1 Myb 14 61
Bo1g102190.1 Myb 67 112

Links

Other Myb/SANT family TFs
Other Brassica oleracea TFs

332 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00032p00057800 Amborella trichopoda AMTR_s00032p00057800 I 0.674
ASU_03287 Ascaris suum ASU_03287 N
AtMYB17 Vitis vinifera VIT_15s0046g03190 I 0.668
BGIOSGA014440 Oryza indica BGIOSGA014440 I 0.666
Bo1g138940 Brassica oleracea Bo1g138940 I 0.680
Bostr.13158s0117 Boechera stricta Bostr.13158s0117 I 0.669
Bra001472 Brassica rapa Bra001472 I 0.672
BRADI3G52260 Brachypodium distachyon BRADI3G52260 I 0.673
BRADI5G20130 Brachypodium distachyon BRADI5G20130 I 0.663
Carubv10016289m.g Capsella rubella Carubv10016289m.g I 0.683
CBG21552 Caenorhabditis briggsae CBG21552 I
CBN19242 Caenorhabditis brenneri CBN19242 I
Ciclev10003958m.g Citrus clementina Ciclev10003958m.g I 0.676
Ciclev10033327m.g Citrus clementina Ciclev10033327m.g I 0.661
CJA02063 Caenorhabditis japonica CJA02063 I
CRE11598 Caenorhabditis remanei CRE11598 I
CRE21432 Caenorhabditis remanei CRE21432 I
dmd-6 Caenorhabditis elegans WBGene00007058 D
Eucgr.E00175 Eucalyptus grandis Eucgr.E00175 I 0.669
evm.TU.supercontig_36.134 Carica papaya evm.TU.supercontig_36.134 I 0.679
F775_14744 Aegilops tauschii F775_14744 I 0.670
F775_18231 Aegilops tauschii F775_18231 I 0.674
gene26044-v1.0-hybrid Fragaria vesca gene26044-v1.0-hybrid I 0.678
GLYMA04G11040 Glycine max GLYMA04G11040 I 0.664
GLYMA06G45554 Glycine max GLYMA06G45554 I 0.664
GLYMA13G37903 Glycine max GLYMA13G37903 I 0.668
GRMZM2G038722 Zea mays GRMZM2G038722 I 0.662
GSMUA_Achr10G24560_001 Musa acuminata GSMUA_Achr10G24560_001 I 0.665
GSMUA_Achr11G04090_001 Musa acuminata GSMUA_Achr11G04090_001 I 0.666
GSMUA_Achr2G18090_001 Musa acuminata GSMUA_Achr2G18090_001 I 0.663
GSMUA_Achr4G27350_001 Musa acuminata GSMUA_Achr4G27350_001 I 0.669
GSMUA_Achr5G12230_001 Musa acuminata GSMUA_Achr5G12230_001 I 0.677
GSMUA_AchrUn_randomG15560_001 Musa acuminata GSMUA_AchrUn_randomG15560_001 I 0.679
Hba_17510 Heterorhabditis bacteriophora Hba_17510 I
L596_g15761 Steinernema carpocapsae L596_g15761 I
L892_g15289 Steinernema scapterisci L892_g15289 I
L893_g4334 Steinernema glaseri L893_g4334 I
L898_g22776 Steinernema monticolum L898_g22776 I
LPERR02G23410 Leersia perrieri LPERR02G23410 I 0.674
Lus10031758.g Linum usitatissimum Lus10031758.g I 0.661
Lus10036472.g Linum usitatissimum Lus10036472.g I 0.675
Lus10041142.g Linum usitatissimum Lus10041142.g I 0.675
MLOC_71418 Hordeum vulgare MLOC_71418 I 0.670
OB02G35920 Oryza brachyantha OB02G35920 I 0.677
OB04G30570 Oryza brachyantha OB04G30570 I 0.666
OBART04G23680 Oryza barthii OBART04G23680 I 0.666
OGLUM04G23630 Oryza glumaepatula OGLUM04G23630 I 0.666
OMERI04G19570 Oryza meridionalis OMERI04G19570 I 0.666
ONIVA04G19740 Oryza nivara ONIVA04G19740 I 0.666
OPUNC02G26430 Oryza punctata OPUNC02G26430 I 0.674
OPUNC04G21230 Oryza punctata OPUNC04G21230 I 0.666
orange1.1g037998m.g Citrus sinensis orange1.1g037998m.g I 0.676
orange1.1g039016m.g Citrus sinensis orange1.1g039016m.g I 0.661
ORGLA04G0202400 Oryza glaberrima ORGLA04G0202400 I 0.666
ORUFI04G25410 Oryza rufipogon ORUFI04G25410 I 0.666
OS04G0594100 Oryza sativa OS04G0594100 I 0.666
PGSC0003DMG400000027 Solanum tuberosum PGSC0003DMG400000027 I 0.663
PGSC0003DMG400020071 Solanum tuberosum PGSC0003DMG400020071 I 0.682
PGSC0003DMG400038913 Solanum tuberosum PGSC0003DMG400038913 I 0.676
Pm015303 Prunus mume Pm015303 I 0.669
POPTR_0004s02570 Populus trichocarpa POPTR_0004s02570 I 0.675
PRUPE_ppa025095mg Prunus persica PRUPE_ppa025095mg I 0.665
Sb04g031110 Sorghum bicolor Sb04g031110 I 0.678
Sb06g027180 Sorghum bicolor Sb06g027180 I 0.663
SELMODRAFT_127220 Selaginella moellendorffii SELMODRAFT_127220 I 0.680
SELMODRAFT_98669 Selaginella moellendorffii SELMODRAFT_98669 I 0.680
Si010384m.g Setaria italica Si010384m.g I 0.667
Si017704m.g Setaria italica Si017704m.g I 0.678
SMUV_0000230101 Syphacia muris SMUV_0000230101 N
Solyc01g094360.2 Solanum lycopersicum Solyc01g094360.2 I 0.667
Solyc06g083900.2 Solanum lycopersicum Solyc06g083900.2 I 0.682
TCNE_0001712701 Toxocara canis TCNE_0001712701 I
TELCIR_10880 Teladorsagia circumcincta TELCIR_10880 I
Thhalv10021926m.g Eutrema salsugineum Thhalv10021926m.g I 0.679
Traes_2AL_CC403D182 Triticum aestivum Traes_2AL_CC403D182 I 0.674
Traes_2BL_FD8C2F815 Triticum aestivum Traes_2BL_FD8C2F815 I 0.674
Traes_2DL_54E6F0446 Triticum aestivum Traes_2DL_54E6F0446 I 0.674
Traes_2DL_D39684C41 Triticum aestivum Traes_2DL_D39684C41 I 0.674
Traes_6AL_C13753B31 Triticum aestivum Traes_6AL_C13753B31 I 0.670
Traes_6DL_8BAAC240D Triticum aestivum Traes_6DL_8BAAC240D I 0.670
TRIUR3_14330 Triticum urartu TRIUR3_14330 I 0.670
TRIUR3_18702 Triticum urartu TRIUR3_18702 I 0.674