Bo7g115810 (Brassica oleracea)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bo7g115810 T267528_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.882 0.964
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.882 0.964
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.826 0.885
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.792 0.871
MYB3R4
M07125_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R4_col_a 		0.766 0.842
Q948S4_TOBAC
M11073_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBB_01 		0.676 0.727
Q948S6_TOBAC
M11075_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA1_01 		0.669 0.784
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo7g115810.1 Myb 32 78
Bo7g115810.1 Myb 84 130
Bo7g115810.1 Myb 136 180

Links

Other Myb/SANT family TFs
Other Brassica oleracea TFs

152 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI1G45260 Brachypodium distachyon BRADI1G45260 N 0.000
BRADI3G59290 Brachypodium distachyon BRADI3G59290 N 0.000
F775_27240 Aegilops tauschii F775_27240 N 0.000
GRMZM2G036092 Zea mays GRMZM2G036092 N 0.000
ILI4 Oryza sativa OS06G0226500 N 0.000
ILI5 Oryza sativa OS02G0747900 N 0.000
ILI5 Oryza indica BGIOSGA005623 N 0.000
LPERR02G26590 Leersia perrieri LPERR02G26590 N 0.000
LPERR06G07460 Leersia perrieri LPERR06G07460 N 0.000
MLOC_55094 Hordeum vulgare MLOC_55094 N 0.000
OB02G39450 Oryza brachyantha OB02G39450 N 0.000
OB06G17570 Oryza brachyantha OB06G17570 N 0.000
OBART02G32470 Oryza barthii OBART02G32470 N 0.000
OGLUM02G33100 Oryza glumaepatula OGLUM02G33100 N 0.000
OLONG_003198 Oryza longistaminata OLONG_003198 N 0.000
OMERI02G31120 Oryza meridionalis OMERI02G31120 N 0.000
OMERI06G09660 Oryza meridionalis OMERI06G09660 N 0.000
ONIVA06G04530 Oryza nivara ONIVA06G04530 N 0.000
ONIVA06G09300 Oryza nivara ONIVA06G09300 N 0.000
OPUNC02G30020 Oryza punctata OPUNC02G30020 N 0.000
OPUNC06G07810 Oryza punctata OPUNC06G07810 N 0.000
ORGLA02G0280200 Oryza glaberrima ORGLA02G0280200 N 0.000
ORGLA06G0076300 Oryza glaberrima ORGLA06G0076300 N 0.000
ORUFI02G34170 Oryza rufipogon ORUFI02G34170 N 0.000
Pavir.Ab02945 Panicum virgatum Pavir.Ab02945 N 0.000
Pavir.Db01746 Panicum virgatum Pavir.Db01746 N 0.000
Pavir.J09493 Panicum virgatum Pavir.J09493 N 0.000
Pavir.J39793 Panicum virgatum Pavir.J39793 N 0.000
Sb10g008000 Sorghum bicolor Sb10g008000 N 0.000
Si007662m.g Setaria italica Si007662m.g N 0.000
Traes_6DL_3F9FA4887 Triticum aestivum Traes_6DL_3F9FA4887 N 0.000
TRIUR3_29197 Triticum urartu TRIUR3_29197 N 0.000