Bra029866 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra029866 T268046_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G05090
M02305_2.00 		Arabidopsis thaliana
NHAGATHCKNN
NNMGDATCTDN		 PBM
Weirauch et al.(2014)
pTH7104 		0.887 0.979
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra029866.1-P Myb 85 135

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

243 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29751.m001898 Ricinus communis 29751.m001898 I 0.745
30180.m001019 Ricinus communis 30180.m001019 I 0.887
AMTR_s00012p00251530 Amborella trichopoda AMTR_s00012p00251530 I 0.805
AMTR_s00019p00208460 Amborella trichopoda AMTR_s00019p00208460 I 0.665
AMTR_s00101p00128190 Amborella trichopoda AMTR_s00101p00128190 I 0.848
Aquca_003_00124 Aquilegia coerulea Aquca_003_00124 I 0.805
Aquca_009_00074 Aquilegia coerulea Aquca_009_00074 I 0.887
Aquca_009_00923 Aquilegia coerulea Aquca_009_00923 I 0.790
AT3G10760 Arabidopsis thaliana AT3G10760 I 0.887
AT5G05090 Arabidopsis thaliana AT5G05090 D 0.887
BGIOSGA000023 Oryza indica BGIOSGA000023 I 0.716
BGIOSGA004786 Oryza indica BGIOSGA004786 I 0.722
BGIOSGA018058 Oryza indica BGIOSGA018058 I 0.887
Bo1g070860 Brassica oleracea Bo1g070860 I 0.805
Bo1g141480 Brassica oleracea Bo1g141480 I 0.801
Bo2g134560 Brassica oleracea Bo2g134560 I 0.700
Bo3g003150 Brassica oleracea Bo3g003150 I 0.887
Bo3g132770 Brassica oleracea Bo3g132770 I 0.805
Bo4g012890 Brassica oleracea Bo4g012890 I 0.887
Bo5g019990 Brassica oleracea Bo5g019990 I 0.887
Bo5g137150 Brassica oleracea Bo5g137150 I 0.887
Bo9g177390 Brassica oleracea Bo9g177390 I 0.887
BOA Arabidopsis thaliana AT5G59570 I 0.805
Bostr.13129s0456 Boechera stricta Bostr.13129s0456 I 0.887
Bostr.18473s0293 Boechera stricta Bostr.18473s0293 I 0.805
Bostr.19424s0999 Boechera stricta Bostr.19424s0999 I 0.887
Bostr.26833s0280 Boechera stricta Bostr.26833s0280 I 0.771
Bostr.27991s0013 Boechera stricta Bostr.27991s0013 I 0.887
Bostr.9345s0035 Boechera stricta Bostr.9345s0035 I 0.887
Bra001378 Brassica rapa Bra001378 I 0.668
Bra004593 Brassica rapa Bra004593 I 0.887
Bra005837 Brassica rapa Bra005837 I 0.887
Bra009087 Brassica rapa Bra009087 I 0.887
Bra018204 Brassica rapa Bra018204 I 0.805
Bra026635 Brassica rapa Bra026635 I 0.739
Bra033809 Brassica rapa Bra033809 I 0.805
Bra034144 Brassica rapa Bra034144 I 0.887
BRADI1G47400 Brachypodium distachyon BRADI1G47400 I 0.702
BRADI1G69480 Brachypodium distachyon BRADI1G69480 I 0.706
BRADI2G25380 Brachypodium distachyon BRADI2G25380 I 0.887
BRADI2G54787 Brachypodium distachyon BRADI2G54787 I 0.688
BRADI2G62067 Brachypodium distachyon BRADI2G62067 I 0.805
BRADI3G54120 Brachypodium distachyon BRADI3G54120 I 0.702
Cagra.0448s0013 Capsella grandiflora Cagra.0448s0013 I 0.805
Cagra.0834s0003 Capsella grandiflora Cagra.0834s0003 I 0.887
Cagra.0995s0002 Capsella grandiflora Cagra.0995s0002 I 0.805
Cagra.1317s0057 Capsella grandiflora Cagra.1317s0057 I 0.803
Cagra.1504s0014 Capsella grandiflora Cagra.1504s0014 I 0.887
Cagra.1642s0062 Capsella grandiflora Cagra.1642s0062 I 0.887
Carubv10003130m.g Capsella rubella Carubv10003130m.g I 0.887
Carubv10014134m.g Capsella rubella Carubv10014134m.g I 0.887
Carubv10017603m.g Capsella rubella Carubv10017603m.g I 0.805
Carubv10024859m.g Capsella rubella Carubv10024859m.g I 0.887
Carubv10024931m.g Capsella rubella Carubv10024931m.g I 0.805
Carubv10026895m.g Capsella rubella Carubv10026895m.g I 0.803
cassava19434.valid.m1 Manihot esculenta cassava19434.valid.m1 I 0.745
cassava20582.m1 Manihot esculenta cassava20582.m1 I 0.887
cassava34353.m1 Manihot esculenta cassava34353.m1 I 0.745
Ca_07144 Cicer arietinum Ca_07144 I 0.887
Ca_16282 Cicer arietinum Ca_16282 I 0.805
CHLREDRAFT_111844 Chlamydomonas reinhardtii CHLREDRAFT_111844 I 0.689
chr1.CM0269.130.nd Lotus japonicus chr1.CM0269.130.nd I 0.887
Ciclev10004989m.g Citrus clementina Ciclev10004989m.g I 0.713
Ciclev10012203m.g Citrus clementina Ciclev10012203m.g I 0.887
Ciclev10028658m.g Citrus clementina Ciclev10028658m.g I 0.805
Cla008353 Citrullus lanatus Cla008353 I 0.805
Cla012286 Citrullus lanatus Cla012286 I 0.887
Cla017714 Citrullus lanatus Cla017714 I 0.887
Cucsa.117700 Cucumis sativus Cucsa.117700 I 0.805
Cucsa.140020 Cucumis sativus Cucsa.140020 I 0.887
Cucsa.358530 Cucumis sativus Cucsa.358530 I 0.887
estExt_fgenesh2_pg.C_Chr_120081 Micromonas sp RCC299 estExt_fgenesh2_pg.C_Chr_120081 I 0.789
est_orfs.10_1861_4270447:1 Micromonas pusilla est_orfs.10_1861_4270447:1 I 0.774
Eucgr.A02201 Eucalyptus grandis Eucgr.A02201 I 0.887
Eucgr.B02313 Eucalyptus grandis Eucgr.B02313 I 0.805
Eucgr.K01670 Eucalyptus grandis Eucgr.K01670 I 0.887
EuGene.0000090108 Micromonas pusilla EuGene.0000090108 I 0.833
EuGene.0000130210 Micromonas pusilla EuGene.0000130210 I 0.688
EuGene.0600010100 Micromonas sp RCC299 EuGene.0600010100 I 0.848
evm.TU.supercontig_81.106 Carica papaya evm.TU.supercontig_81.106 I 0.805
evm.TU.supercontig_92.70 Carica papaya evm.TU.supercontig_92.70 I 0.887
e_gw1.1.649.1 Ostreococcus RCC809 e_gw1.1.649.1 I 0.688
F775_08927 Aegilops tauschii F775_08927 I 0.701
F775_32153 Aegilops tauschii F775_32153 I 0.706
fgenesh2_kg.8__1908__AT5G59570.1 Arabidopsis lyrata fgenesh2_kg.8__1908__AT5G59570.1 I 0.805
fgeneshCV_pg.C_scaffold_15000185 Chlorella vulgaris fgeneshCV_pg.C_scaffold_15000185 I 0.666
gene17673-v1.0-hybrid Fragaria vesca gene17673-v1.0-hybrid I 0.887
gene30204-v1.0-hybrid Fragaria vesca gene30204-v1.0-hybrid I 0.805
GLYMA02G21820 Glycine max GLYMA02G21820 I 0.887
GLYMA03G27890 Glycine max GLYMA03G27890 I 0.887
GLYMA11G14490 Glycine max GLYMA11G14490 I 0.805
GLYMA12G06406 Glycine max GLYMA12G06406 I 0.805
GLYMA19G30700 Glycine max GLYMA19G30700 I 0.887
Gorai.001G112200 Gossypium raimondii Gorai.001G112200 I 0.805
Gorai.002G230800 Gossypium raimondii Gorai.002G230800 I 0.887
Gorai.003G129100 Gossypium raimondii Gorai.003G129100 I 0.805
Gorai.007G351500 Gossypium raimondii Gorai.007G351500 I 0.887
Gorai.009G097100 Gossypium raimondii Gorai.009G097100 I 0.805
GRMZM2G067702 Zea mays GRMZM2G067702 I 0.797
GRMZM2G074908 Zea mays GRMZM2G074908 I 0.692
GRMZM2G099797 Zea mays GRMZM2G099797 I 0.706
GRMZM2G126834 Zea mays GRMZM2G126834 I 0.706
GRMZM2G398055 Zea mays GRMZM2G398055 I 0.887
GRMZM2G471600 Zea mays GRMZM2G471600 I 0.827
GSMUA_Achr10G02420_001 Musa acuminata GSMUA_Achr10G02420_001 I 0.805
GSMUA_Achr10G12590_001 Musa acuminata GSMUA_Achr10G12590_001 I 0.833
GSMUA_Achr11G14170_001 Musa acuminata GSMUA_Achr11G14170_001 I 0.887
GSMUA_Achr2G01920_001 Musa acuminata GSMUA_Achr2G01920_001 I 0.887
GSMUA_Achr5G07060_001 Musa acuminata GSMUA_Achr5G07060_001 I 0.805
GSMUA_Achr5G27500_001 Musa acuminata GSMUA_Achr5G27500_001 I 0.887
GSMUA_Achr8G05880_001 Musa acuminata GSMUA_Achr8G05880_001 I 0.887
GSMUA_AchrUn_randomG18750_001 Musa acuminata GSMUA_AchrUn_randomG18750_001 I 0.799
gw1.104.128.1 Physcomitrella patens gw1.104.128.1 I 0.848
gw1.15.242.1 Coccomyxa subellipsoidea C169 gw1.15.242.1 I 0.666
gw1.27.80.1 Physcomitrella patens gw1.27.80.1 I 0.848
gw1.29.164.1 Physcomitrella patens gw1.29.164.1 I 0.848
gw1.29.165.1 Physcomitrella patens gw1.29.165.1 I 0.848
gw1.37.160.1 Volvox carteri gw1.37.160.1 I 0.689
LPERR01G31830 Leersia perrieri LPERR01G31830 I 0.722
LPERR01G39850 Leersia perrieri LPERR01G39850 I 0.716
LPERR03G08040 Leersia perrieri LPERR03G08040 I 0.706
LPERR05G13030 Leersia perrieri LPERR05G13030 I 0.887
Lus10010442.g Linum usitatissimum Lus10010442.g I 0.887
Lus10012102.g Linum usitatissimum Lus10012102.g I 0.887
Lus10027291.g Linum usitatissimum Lus10027291.g I 0.887
Lus10038996.g Linum usitatissimum Lus10038996.g I 0.887
MDP0000669078 Malus domestica MDP0000669078 I 0.787
MDP0000672486 Malus domestica MDP0000672486 I 0.805
MDP0000846313 Malus domestica MDP0000846313 I 0.887
mg021488m Mimulus guttatus mg021488m I 0.686
mgf008790m Mimulus guttatus mgf008790m I 0.698
mgf014801m Mimulus guttatus mgf014801m I 0.887
MLOC_24056 Hordeum vulgare MLOC_24056 I 0.887
MLOC_24962 Hordeum vulgare MLOC_24962 I 0.701
MLOC_37446 Hordeum vulgare MLOC_37446 I 0.805
MLOC_76165 Hordeum vulgare MLOC_76165 I 0.702
MTR_4g064730 Medicago truncatula MTR_4g064730 I 0.805
MTR_7g089010 Medicago truncatula MTR_7g089010 I 0.887
MYBC1 Arabidopsis thaliana AT2G40970 I 0.887
MYBC1 Arabidopsis lyrata scaffold_402901.1 I 0.887
OB03G19140 Oryza brachyantha OB03G19140 I 0.706
OBART01G37040 Oryza barthii OBART01G37040 I 0.722
OBART01G45440 Oryza barthii OBART01G45440 I 0.716
OBART03G08950 Oryza barthii OBART03G08950 I 0.706
OGLUM01G41000 Oryza glumaepatula OGLUM01G41000 I 0.722
OGLUM01G49830 Oryza glumaepatula OGLUM01G49830 I 0.716
OGLUM03G09080 Oryza glumaepatula OGLUM03G09080 I 0.706
OLONG_001321 Oryza longistaminata OLONG_001321 I 0.701
OLONG_002370 Oryza longistaminata OLONG_002370 I 0.706
OLONG_010516 Oryza longistaminata OLONG_010516 I 0.716
OMERI01G34110 Oryza meridionalis OMERI01G34110 I 0.722
OMERI01G42240 Oryza meridionalis OMERI01G42240 I 0.716
OMERI03G08390 Oryza meridionalis OMERI03G08390 I 0.706
OMERI05G06680 Oryza meridionalis OMERI05G06680 I 0.887
ONIVA01G41940 Oryza nivara ONIVA01G41940 I 0.722
ONIVA01G51730 Oryza nivara ONIVA01G51730 I 0.716
ONIVA05G17050 Oryza nivara ONIVA05G17050 I 0.887
ONIVA06G01160 Oryza nivara ONIVA06G01160 I 0.706
OPUNC01G35910 Oryza punctata OPUNC01G35910 I 0.722
OPUNC01G44410 Oryza punctata OPUNC01G44410 I 0.716
OPUNC03G08640 Oryza punctata OPUNC03G08640 I 0.706
OPUNC05G14480 Oryza punctata OPUNC05G14480 I 0.887
orange1.1g020690m.g Citrus sinensis orange1.1g020690m.g I 0.887
orange1.1g047187m.g Citrus sinensis orange1.1g047187m.g I 0.805
ORGLA01G0309000 Oryza glaberrima ORGLA01G0309000 I 0.722
ORGLA01G0392100 Oryza glaberrima ORGLA01G0392100 I 0.716
ORGLA03G0086800 Oryza glaberrima ORGLA03G0086800 I 0.706
ORGLA05G0141400 Oryza glaberrima ORGLA05G0141400 I 0.887
ORUFI01G40390 Oryza rufipogon ORUFI01G40390 I 0.722
ORUFI01G48960 Oryza rufipogon ORUFI01G48960 I 0.716
ORUFI03G09090 Oryza rufipogon ORUFI03G09090 I 0.706
OS01G0844900 Oryza sativa OS01G0844900 I 0.722
OS05G0412000 Oryza sativa OS05G0412000 I 0.887
Pavir.Ba03246 Panicum virgatum Pavir.Ba03246 I 0.805
Pavir.Ea04181 Panicum virgatum Pavir.Ea04181 I 0.805
Pavir.Eb04079 Panicum virgatum Pavir.Eb04079 I 0.805
Pavir.Ia04946 Panicum virgatum Pavir.Ia04946 I 0.706
Pavir.Ib00921 Panicum virgatum Pavir.Ib00921 I 0.706
Pavir.J06465 Panicum virgatum Pavir.J06465 I 0.722
Pavir.J10623 Panicum virgatum Pavir.J10623 I 0.722
PCL1 Arabidopsis thaliana AT3G46640 I 0.805
PCL1 Arabidopsis lyrata fgenesh2_kg.5__1030__AT3G46640.2 I 0.805
PCL1 Oryza sativa OS01G0971800 I 0.716
PDK_20s1346241g001 Phoenix dactylifera PDK_20s1346241g001 I 0.668
PGSC0003DMG400002144 Solanum tuberosum PGSC0003DMG400002144 I 0.805
PGSC0003DMG400007174 Solanum tuberosum PGSC0003DMG400007174 I 0.887
PGSC0003DMG400028100 Solanum tuberosum PGSC0003DMG400028100 I 0.827
PGSC0003DMG400030328 Solanum tuberosum PGSC0003DMG400030328 I 0.799
PK02601.1 Cannabis sativa PK02601.1 I 0.702
PK05290.1 Cannabis sativa PK05290.1 I 0.805
PK23977.1 Cannabis sativa PK23977.1 I 0.887
Pm000693 Prunus mume Pm000693 I 0.805
Pm031149 Prunus mume Pm031149 I 0.887
POPTR_0001s25040 Populus trichocarpa POPTR_0001s25040 I 0.698
POPTR_0006s03340 Populus trichocarpa POPTR_0006s03340 I 0.848
POPTR_0008s13490 Populus trichocarpa POPTR_0008s13490 I 0.706
POPTR_0009s03990 Populus trichocarpa POPTR_0009s03990 I 0.805
POPTR_0015s13860 Populus trichocarpa POPTR_0015s13860 I 0.665
POPTR_0016s03240 Populus trichocarpa POPTR_0016s03240 I 0.848
PRUPE_ppa008837mg Prunus persica PRUPE_ppa008837mg I 0.805
PRUPE_ppa026577mg Prunus persica PRUPE_ppa026577mg I 0.887
RR21 Oryza indica BGIOSGA012149 I 0.706
RR21 Oryza sativa OS03G0224200 I 0.706
SapurV1A.0015s0530 Salix purpurea SapurV1A.0015s0530 I 0.706
SapurV1A.0041s0350 Salix purpurea SapurV1A.0041s0350 I 0.787
SapurV1A.0128s0090 Salix purpurea SapurV1A.0128s0090 I 0.805
SapurV1A.0159s0180 Salix purpurea SapurV1A.0159s0180 I 0.848
SapurV1A.1916s0020 Salix purpurea SapurV1A.1916s0020 I 0.848
Sb01g042400 Sorghum bicolor Sb01g042400 I 0.706
Sb03g039610 Sorghum bicolor Sb03g039610 I 0.722
Sb03g047330 Sorghum bicolor Sb03g047330 I 0.805
Sb09g020340 Sorghum bicolor Sb09g020340 I 0.884
scaffold_301238.1 Arabidopsis lyrata scaffold_301238.1 I 0.887
scaffold_600469.1 Arabidopsis lyrata scaffold_600469.1 I 0.887
SELMODRAFT_115021 Selaginella moellendorffii SELMODRAFT_115021 I 0.695
SELMODRAFT_187683 Selaginella moellendorffii SELMODRAFT_187683 I 0.675
SELMODRAFT_36646 Selaginella moellendorffii SELMODRAFT_36646 I 0.848
SELMODRAFT_418787 Selaginella moellendorffii SELMODRAFT_418787 I 0.675
SELMODRAFT_440049 Selaginella moellendorffii SELMODRAFT_440049 I 0.695
Si002016m.g Setaria italica Si002016m.g I 0.722
Si002653m.g Setaria italica Si002653m.g I 0.805
Si034517m.g Setaria italica Si034517m.g I 0.706
Solyc06g005680.2 Solanum lycopersicum Solyc06g005680.2 I 0.805
Solyc06g076350.2 Solanum lycopersicum Solyc06g076350.2 I 0.799
Solyc10g078310.1 Solanum lycopersicum Solyc10g078310.1 I 0.887
Solyc10g080960.1 Solanum lycopersicum Solyc10g080960.1 I 0.827
TCM_041791 Theobroma cacao TCM_041791 I 0.805
TCM_045790 Theobroma cacao TCM_045790 I 0.869
Thhalv10002605m.g Eutrema salsugineum Thhalv10002605m.g I 0.805
Thhalv10004402m.g Eutrema salsugineum Thhalv10004402m.g I 0.705
Thhalv10014387m.g Eutrema salsugineum Thhalv10014387m.g I 0.887
Thhalv10017945m.g Eutrema salsugineum Thhalv10017945m.g I 0.887
Thhalv10021133m.g Eutrema salsugineum Thhalv10021133m.g I 0.887
TRAES3BF076800040CFD_g Triticum aestivum TRAES3BF076800040CFD_g I 0.805
Traes_4AS_6486B493A Triticum aestivum Traes_4AS_6486B493A I 0.706
Traes_4BL_941E7DE4D Triticum aestivum Traes_4BL_941E7DE4D I 0.706
Traes_4DL_2527CA8BF Triticum aestivum Traes_4DL_2527CA8BF I 0.706
Traes_6AL_9C9D677D4 Triticum aestivum Traes_6AL_9C9D677D4 I 0.702
Traes_6BL_790C095EE Triticum aestivum Traes_6BL_790C095EE I 0.702
Traes_6DL_D1C9CE275 Triticum aestivum Traes_6DL_D1C9CE275 I 0.702
TRIUR3_25342 Triticum urartu TRIUR3_25342 I 0.706
VIT_06s0004g05120 Vitis vinifera VIT_06s0004g05120 I 0.805
VIT_08s0040g00900 Vitis vinifera VIT_08s0040g00900 I 0.887