Solyc04g045430.2 (Solanum lycopersicum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Solyc04g045430.2 T280100_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASR3
M07053_2.00 		Arabidopsis thaliana
DNNNNHHWNDRCCCTWAW
WTWAGGGYHNWDDNNNNH		 Dap-seq
OMalley et al.(2016)
AT2G33550_col_a 		0.909 0.957
ASR3
M07054_2.00 		Arabidopsis thaliana
NHWDDTRCCCTWMW
WKWAGGGYAHHWDN		 Dap-seq
OMalley et al.(2016)
AT2G33550_colamp_a 		0.909 0.957
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc04g045430.2.1 Myb 31 98

Links

Other Myb/SANT family TFs
Other Solanum lycopersicum TFs

38 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo1g115980 Brassica oleracea Bo1g115980 I 0.000
Bo3g071890 Brassica oleracea Bo3g071890 I 0.000
Bo5g116790 Brassica oleracea Bo5g116790 I 0.000
Bostr.19424s0762 Boechera stricta Bostr.19424s0762 I 0.000
Bra001729 Brassica rapa Bra001729 I 0.000
Bra037544 Brassica rapa Bra037544 I 0.000
Cagra.5105s0003 Capsella grandiflora Cagra.5105s0003 I 0.000
Carubv10015637m.g Capsella rubella Carubv10015637m.g I 0.000
Cla010445 Citrullus lanatus Cla010445 I 0.000
evm.TU.supercontig_62.76 Carica papaya evm.TU.supercontig_62.76 I 0.000
Gorai.002G006500 Gossypium raimondii Gorai.002G006500 I 0.000
Gorai.005G240900 Gossypium raimondii Gorai.005G240900 I 0.000
Gorai.012G150900 Gossypium raimondii Gorai.012G150900 I 0.000
Gorai.013G040000 Gossypium raimondii Gorai.013G040000 I 0.000
TCM_006971 Theobroma cacao TCM_006971 I 0.000
Thhalv10021075m.g Eutrema salsugineum Thhalv10021075m.g I 0.000
VRN1 Arabidopsis lyrata fgenesh2_kg.3__2116__AT3G18990.1 I 0.000
VRN1 Arabidopsis thaliana AT3G18990 D 0.000