TCM_015255 (Theobroma cacao)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 TCM_015255 T280502_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK02532.1
M02347_2.00 		Cannabis sativa
WAATATCTN
NAGATATTW		 PBM
Weirauch et al.(2014)
pTH9579 		0.909 1.000
RVE8
M01074_2.00 		Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN		 PBM
Sullivan et al.(2014)
pTH7136 		0.901 0.957
RVE8
M07069_2.00 		Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN		 Dap-seq
OMalley et al.(2016)
At3g09600_col_a 		0.901 0.957
RVE8
M07070_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a 		0.901 0.957
RVE4
M07117_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LCL1_colamp_a 		0.901 0.957
RVE4
M07118_2.00 		Arabidopsis thaliana
NAAAATATCT
AGATATTTTN		 Dap-seq
OMalley et al.(2016)
LCL1_col 		0.901 0.957
RVE6
M01081_2.00 		Arabidopsis thaliana
AATATCTD
HAGATATT		 PBM
Sullivan et al.(2014)
pTH7151 		0.899 0.978
RVE6
M07138_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At5g52660_col_a 		0.899 0.978
RVE6
M07139_2.00 		Arabidopsis thaliana
NNNWAAATATCT
AGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a 		0.899 0.978
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.818 0.870
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.803 0.891
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.803 0.891
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.803 0.891
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.706 0.696
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.670 0.652
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.670 0.652
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.670 0.652
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY23319 Myb 57 102
EOY23320 Myb 57 102
EOY23321 Myb 57 102
EOY23322 Myb 39 84
EOY23323 Myb 28 73
EOY23324 Myb 57 102
EOY23325 Myb 57 102
EOY23326 Myb 28 73
EOY23327 Myb 28 73
EOY23328 Myb 28 73
EOY23329 Myb 57 102

Links

Other Myb/SANT family TFs
Other Theobroma cacao TFs

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29864.m001444 Ricinus communis 29864.m001444 N
AMTR_s00025p00248060 Amborella trichopoda AMTR_s00025p00248060 N
Bo2g011520 Brassica oleracea Bo2g011520 N
Bo9g166510 Brassica oleracea Bo9g166510 N
Bostr.2902s0107 Boechera stricta Bostr.2902s0107 N
Bra008807 Brassica rapa Bra008807 N
Bra023430 Brassica rapa Bra023430 N
Cagra.0596s0063 Capsella grandiflora Cagra.0596s0063 N
Carubv10001054m.g Capsella rubella Carubv10001054m.g N
cassava43094.valid.m1 Manihot esculenta cassava43094.valid.m1 N
Ca_22857 Cicer arietinum Ca_22857 N
Ciclev10033747m.g Citrus clementina Ciclev10033747m.g N
Cla017559 Citrullus lanatus Cla017559 N
Cucsa.248920 Cucumis sativus Cucsa.248920 N
evm.TU.supercontig_125.39 Carica papaya evm.TU.supercontig_125.39 N
gene29494-v1.0-hybrid Fragaria vesca gene29494-v1.0-hybrid N
GSMUA_Achr4G18530_001 Musa acuminata GSMUA_Achr4G18530_001 N
LjSGA_045184.1 Lotus japonicus LjSGA_045184.1 N
MDP0000235160 Malus domestica MDP0000235160 N
MDP0000266956 Malus domestica MDP0000266956 N
mgf003626m Mimulus guttatus mgf003626m N
MTR_3g033420 Medicago truncatula MTR_3g033420 N
orange1.1g046578m.g Citrus sinensis orange1.1g046578m.g N
PDK_20s1385451g001 Phoenix dactylifera PDK_20s1385451g001 N
PGSC0003DMG402006783 Solanum tuberosum PGSC0003DMG402006783 N
PK06863.1 Cannabis sativa PK06863.1 N
Pm016510 Prunus mume Pm016510 N
PRUPE_ppa017025mg Prunus persica PRUPE_ppa017025mg N
SapurV1A.0027s0740 Salix purpurea SapurV1A.0027s0740 N
SapurV1A.4644s0020 Salix purpurea SapurV1A.4644s0020 N
SIG4 Vitis vinifera VIT_13s0064g00190 N
SIG4 Arabidopsis lyrata scaffold_601382.1 N
SIG4 Populus trichocarpa POPTR_0009s06210 N
SIGD Arabidopsis thaliana AT5G13730 N
Solyc01g087690.1 Solanum lycopersicum Solyc01g087690.1 N
Thhalv10013654m.g Eutrema salsugineum Thhalv10013654m.g N