cassava9008.m1 (Manihot esculenta)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 cassava9008.m1 T284340_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB118
M07087_2.00 		Arabidopsis thaliana
DHWDHRDMCGTTACDWW
WWHGTAACGKHYDHWDH		 Dap-seq
OMalley et al.(2016)
MYB118_col_a 		0.748 0.849
MYB118
M07088_2.00 		Arabidopsis thaliana
DWWWYGTAACGKHYR
YRDMCGTTACRWWWH		 Dap-seq
OMalley et al.(2016)
MYB118_colamp_a 		0.748 0.849
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava9008.m1 Myb 212 258
cassava9008.m1 Myb 264 309

Links

Other Myb/SANT family TFs
Other Manihot esculenta TFs

134 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA010468 Oryza indica BGIOSGA010468 I
BGIOSGA010469 Oryza indica BGIOSGA010469 N
BGIOSGA010470 Oryza indica BGIOSGA010470 N
Bo7g117320 Brassica oleracea Bo7g117320 I
BRADI2G49250 Brachypodium distachyon BRADI2G49250 N
Cagra.2350s0072 Capsella grandiflora Cagra.2350s0072 I
Ca_05641 Cicer arietinum Ca_05641 I
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I
F775_12743 Aegilops tauschii F775_12743 N
GLYMA10G40400 Glycine max GLYMA10G40400 I
GRMZM5G883760 Zea mays GRMZM5G883760 N
GSMUA_Achr10G31400_001 Musa acuminata GSMUA_Achr10G31400_001 N
GSMUA_Achr6G34890_001 Musa acuminata GSMUA_Achr6G34890_001 I
GSMUA_Achr7G20260_001 Musa acuminata GSMUA_Achr7G20260_001 N
gw1.254.15.1 Physcomitrella patens gw1.254.15.1 I
LPERR03G19190 Leersia perrieri LPERR03G19190 N
LPERR03G21480 Leersia perrieri LPERR03G21480 I
MLOC_51405 Hordeum vulgare MLOC_51405 I
OB03G31780 Oryza brachyantha OB03G31780 I
OB03G31790 Oryza brachyantha OB03G31790 N
OBART03G22560 Oryza barthii OBART03G22560 N
OBART03G22570 Oryza barthii OBART03G22570 I
OGLUM03G23340 Oryza glumaepatula OGLUM03G23340 N
OGLUM03G23350 Oryza glumaepatula OGLUM03G23350 I
OLONG_027628 Oryza longistaminata OLONG_027628 I
OPUNC03G21190 Oryza punctata OPUNC03G21190 N
OPUNC12G15600 Oryza punctata OPUNC12G15600 I
ORGLA03G0210200 Oryza glaberrima ORGLA03G0210200 N
ORGLA03G0210300 Oryza glaberrima ORGLA03G0210300 I
ORUFI03G23230 Oryza rufipogon ORUFI03G23230 N
ORUFI03G23240 Oryza rufipogon ORUFI03G23240 I
OS03G0437100 Oryza sativa OS03G0437100 N
OS03G0437200 Oryza sativa OS03G0437200 I
OS11G0340477 Oryza sativa OS11G0340477 N
OS12G0583700 Oryza sativa OS12G0583700 I
PDK_20s1446781g002 Phoenix dactylifera PDK_20s1446781g002 N
Sb01g031920 Sorghum bicolor Sb01g031920 N
Si037343m.g Setaria italica Si037343m.g N
Si037516m.g Setaria italica Si037516m.g N
Traes_2BS_494F02775 Triticum aestivum Traes_2BS_494F02775 N
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I