Carubv10028458m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10028458m.g T286475_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB98
M02301_2.00 		Arabidopsis thaliana
NNGTAACGKMN
NKMCGTTACNN		 PBM
Weirauch et al.(2014)
pTH8148 		0.672 0.753
MYB98
M07108_2.00 		Arabidopsis thaliana
DWWWHGTAACGKWHD
HDWMCGTTACDWWWH		 Dap-seq
OMalley et al.(2016)
MYB98_col_a 		0.672 0.753
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10028458m Myb 107 153
Carubv10028458m Myb 159 204

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

104 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29681.m001315 Ricinus communis 29681.m001315 N 0.695
30147.m013937 Ricinus communis 30147.m013937 I 0.682
BGIOSGA022369 Oryza indica BGIOSGA022369 I 0.706
BGIOSGA036541 Oryza indica BGIOSGA036541 I 0.673
Bo1g019910 Brassica oleracea Bo1g019910 I 0.672
Bo2g028290 Brassica oleracea Bo2g028290 I 0.875
Bo3g018490 Brassica oleracea Bo3g018490 I 0.862
Bo3g157300 Brassica oleracea Bo3g157300 I 0.669
Bostr.20821s0001 Boechera stricta Bostr.20821s0001 N 0.875
Bostr.23997s0007 Boechera stricta Bostr.23997s0007 N 0.718
Bostr.30275s0352 Boechera stricta Bostr.30275s0352 I 0.672
Bra006744 Brassica rapa Bra006744 I 0.862
Bra013346 Brassica rapa Bra013346 I 0.672
Bra020346 Brassica rapa Bra020346 I 0.888
Cagra.0891s0081 Capsella grandiflora Cagra.0891s0081 I 0.909
Cagra.1398s0045 Capsella grandiflora Cagra.1398s0045 N 0.795
Cagra.4306s0015 Capsella grandiflora Cagra.4306s0015 I 0.672
Carubv10003695m.g Capsella rubella Carubv10003695m.g N 0.795
Carubv10006734m.g Capsella rubella Carubv10006734m.g I 0.672
cassava26507.m1 Manihot esculenta cassava26507.m1 N 0.715
cassava26674.m1 Manihot esculenta cassava26674.m1 N 0.695
cassava33974.m1 Manihot esculenta cassava33974.m1 I 0.682
chr4.CM0042.120.nd Lotus japonicus chr4.CM0042.120.nd N 0.711
Ciclev10030254m.g Citrus clementina Ciclev10030254m.g N 0.727
Cla008304 Citrullus lanatus Cla008304 N 0.735
Cla019490 Citrullus lanatus Cla019490 I 0.682
Cucsa.146980 Cucumis sativus Cucsa.146980 N 0.732
Cucsa.196850 Cucumis sativus Cucsa.196850 I 0.685
evm.TU.supercontig_112.44 Carica papaya evm.TU.supercontig_112.44 N 0.715
F775_22212 Aegilops tauschii F775_22212 I 0.715
fgenesh2_kg.277__1__AT5G58850.1 Arabidopsis lyrata fgenesh2_kg.277__1__AT5G58850.1 I 0.900
fgenesh2_kg.3__2684__AT5G58850.1 Arabidopsis lyrata fgenesh2_kg.3__2684__AT5G58850.1 I 0.900
gene08006-v1.0-hybrid Fragaria vesca gene08006-v1.0-hybrid I 0.686
GLYMA02G39070 Glycine max GLYMA02G39070 N 0.740
GLYMA14G37140 Glycine max GLYMA14G37140 N 0.730
GLYMA18G07360 Glycine max GLYMA18G07360 N 0.676
Gorai.001G115300 Gossypium raimondii Gorai.001G115300 N 0.674
Gorai.008G295800 Gossypium raimondii Gorai.008G295800 I 0.685
Gorai.011G044100 Gossypium raimondii Gorai.011G044100 N 0.674
GRMZM5G870592 Zea mays GRMZM5G870592 I 0.692
GSMUA_Achr6G33700_001 Musa acuminata GSMUA_Achr6G33700_001 N 0.664
LjSGA_147332.1 Lotus japonicus LjSGA_147332.1 N 0.721
LPERR06G03780 Leersia perrieri LPERR06G03780 I 0.706
LPERR12G04190 Leersia perrieri LPERR12G04190 I 0.673
Lus10002384.g Linum usitatissimum Lus10002384.g I 0.674
Lus10018220.g Linum usitatissimum Lus10018220.g N 0.697
Lus10027695.g Linum usitatissimum Lus10027695.g I 0.703
Lus10039966.g Linum usitatissimum Lus10039966.g I 0.673
Lus10040684.g Linum usitatissimum Lus10040684.g N 0.693
Lus10042111.g Linum usitatissimum Lus10042111.g I 0.695
MDP0000319656 Malus domestica MDP0000319656 I 0.683
MDP0000555913 Malus domestica MDP0000555913 N 0.668
MTR_3g463400 Medicago truncatula MTR_3g463400 N 0.693
MTR_5g070020 Medicago truncatula MTR_5g070020 N 0.749
MYB64 Arabidopsis thaliana AT5G11050 N 0.819
MYB64 Arabidopsis lyrata fgenesh2_kg.6__1071__AT5G11050.1 N 0.819
MYB98 Arabidopsis thaliana AT4G18770 D 0.672
OB06G13860 Oryza brachyantha OB06G13860 I 0.706
OBART06G04170 Oryza barthii OBART06G04170 I 0.706
OBART12G04480 Oryza barthii OBART12G04480 I 0.673
OBART12G04500 Oryza barthii OBART12G04500 I 0.673
OGLUM06G04280 Oryza glumaepatula OGLUM06G04280 I 0.706
OGLUM12G05330 Oryza glumaepatula OGLUM12G05330 I 0.673
OLONG_008158 Oryza longistaminata OLONG_008158 I 0.673
OLONG_010000 Oryza longistaminata OLONG_010000 I 0.706
OMERI06G04840 Oryza meridionalis OMERI06G04840 I 0.706
OMERI12G02760 Oryza meridionalis OMERI12G02760 I 0.673
ONIVA06G05390 Oryza nivara ONIVA06G05390 I 0.706
ONIVA12G04220 Oryza nivara ONIVA12G04220 I 0.673
OPUNC06G03990 Oryza punctata OPUNC06G03990 I 0.706
OPUNC12G04510 Oryza punctata OPUNC12G04510 I 0.664
orange1.1g046581m.g Citrus sinensis orange1.1g046581m.g N 0.727
ORGLA06G0038500 Oryza glaberrima ORGLA06G0038500 I 0.706
ORGLA12G0042300 Oryza glaberrima ORGLA12G0042300 I 0.673
ORUFI06G04170 Oryza rufipogon ORUFI06G04170 I 0.706
ORUFI12G05180 Oryza rufipogon ORUFI12G05180 I 0.673
OS06G0162700 Oryza sativa OS06G0162700 I 0.706
Pavir.J02497 Panicum virgatum Pavir.J02497 I 0.715
Pavir.J02718 Panicum virgatum Pavir.J02718 I 0.715
Pavir.J25000 Panicum virgatum Pavir.J25000 I 0.691
Pavir.J37434 Panicum virgatum Pavir.J37434 I 0.678
PDK_20s1782461g001 Phoenix dactylifera PDK_20s1782461g001 N 0.670
PGSC0003DMG400044141 Solanum tuberosum PGSC0003DMG400044141 N 0.721
Pm000541 Prunus mume Pm000541 I 0.686
POPTR_0001s25710 Populus trichocarpa POPTR_0001s25710 N 0.691
POPTR_0009s04870 Populus trichocarpa POPTR_0009s04870 N 0.681
PRUPE_ppa018123mg Prunus persica PRUPE_ppa018123mg I 0.686
SapurV1A.0396s0170 Salix purpurea SapurV1A.0396s0170 I 0.663
SapurV1A.0772s0150 Salix purpurea SapurV1A.0772s0150 N 0.661
Sb01g005100 Sorghum bicolor Sb01g005100 I 0.698
Si039046m.g Setaria italica Si039046m.g I 0.673
Solyc06g076840.1 Solanum lycopersicum Solyc06g076840.1 N 0.721
TCM_012087 Theobroma cacao TCM_012087 I 0.685
TCM_041651 Theobroma cacao TCM_041651 N 0.701
Thhalv10015404m.g Eutrema salsugineum Thhalv10015404m.g N 0.854
Thhalv10016057m.g Eutrema salsugineum Thhalv10016057m.g I 0.828
Thhalv10026824m.g Eutrema salsugineum Thhalv10026824m.g I 0.669
Thhalv10027294m.g Eutrema salsugineum Thhalv10027294m.g N 0.854
Traes_1BL_4D9406708 Triticum aestivum Traes_1BL_4D9406708 I 0.703
Traes_1DL_918A8F357 Triticum aestivum Traes_1DL_918A8F357 I 0.702
Traes_7AS_A337F362A Triticum aestivum Traes_7AS_A337F362A I 0.715
Traes_7BS_D28CCE3B8 Triticum aestivum Traes_7BS_D28CCE3B8 I 0.715
Traes_7DS_E27ECBC6E Triticum aestivum Traes_7DS_E27ECBC6E I 0.686
TRIUR3_12421 Triticum urartu TRIUR3_12421 I 0.715