Pavir.Fa00877 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Fa00877 T289180_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB106
M11040_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT3G01140_01 		0.888 0.968
MYB107
M07061_2.00 		Arabidopsis thaliana
NDDWDBBYYACCWAMYHH
DDRKTWGGTRRVVHWHHN		 Dap-seq
OMalley et al.(2016)
MYB107_col_a 		0.776 0.785
MYB107
M07062_2.00 		Arabidopsis thaliana
WNBYYYACCWAMYH
DRKTWGGTRRRVNW		 Dap-seq
OMalley et al.(2016)
MYB107_colamp_a 		0.776 0.785
AtMYB93
M07020_2.00 		Arabidopsis thaliana
HDNYYYAMCWAMYHHHHHHHH
DDDDDDDDRKTWGKTRRRNHD		 Dap-seq
OMalley et al.(2016)
MYB93_col_a 		0.752 0.796
AtMYB93
M07021_2.00 		Arabidopsis thaliana
NNHNBYYYAMCWAMY
RKTWGKTRRRVNDNN		 Dap-seq
OMalley et al.(2016)
MYB93_colamp_a 		0.752 0.796
MYB92
M07123_2.00 		Arabidopsis thaliana
NHHACCTAMY
RKTAGGTDDN		 Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b 		0.736 0.731
MYB92
M07124_2.00 		Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH
DDRKTWGGTRRRNNWNNNN		 Dap-seq
OMalley et al.(2016)
MYB92_colamp_a 		0.736 0.731
MYB39
M07106_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_col_a 		0.718 0.774
MYB39
M07107_2.00 		Arabidopsis thaliana
NYYYACCWAMYWHHHHHHHNH
DNDDDDDDDWRKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_colamp_a 		0.718 0.774
MYB49
M07140_2.00 		Arabidopsis thaliana
HDBBYYACCWAMYWH
DWRKTWGGTRRVVHD		 Dap-seq
OMalley et al.(2016)
MYB49_col_a 		0.704 0.806
MYB49
M07141_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHN
NDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB49_colamp_a 		0.704 0.806
AtMYB17
M07099_2.00 		Arabidopsis thaliana
YYYACCWACCWHHHH
DDDDWGGTWGGTRRR		 Dap-seq
OMalley et al.(2016)
MYB17_colamp_a 		0.675 0.742
ATMYB13
M06999_2.00 		Arabidopsis thaliana
HYCACCWACCHHHNH
DNDDDGGTWGGTGRD		 Dap-seq
OMalley et al.(2016)
MYB13_col_a 		0.666 0.710
ATMYB13
M07000_2.00 		Arabidopsis thaliana
BYCACCWACCHHHNNHNN
NNDNNDDDGGTWGGTGRV		 Dap-seq
OMalley et al.(2016)
MYB13_colamp_a 		0.666 0.710
PK28187.1
M01286_2.00 		Cannabis sativa
TACCTACC
GGTAGGTA		 PBM
Lambert et al.(2019)
pTH11305 		0.662 0.785
AtMYB74
M07104_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB74_colamp_a 		0.662 0.774
AtMYB74
M07105_2.00 		Arabidopsis thaliana
BYHYACCTAMYHHH
DDDRKTAGGTRDRV		 Dap-seq
OMalley et al.(2016)
MYB74_col 		0.662 0.774
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Fa00877.1.p Myb 67 114
Pavir.Fa00877.1.p Myb 120 165
Pavir.Fa00877.2.p Myb 5 25
Pavir.Fa00877.2.p Myb 31 76

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

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Name Species Gene ID Motif Evidence SR
Score		 Action
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cassava41279.m1 Manihot esculenta cassava41279.m1 N
Ciclev10013340m.g Citrus clementina Ciclev10013340m.g I
Ciclev10023930m.g Citrus clementina Ciclev10023930m.g N
Cucsa.197410 Cucumis sativus Cucsa.197410 N
Cucsa.339230 Cucumis sativus Cucsa.339230 N
estExt_Genewise1.C_360117 Physcomitrella patens estExt_Genewise1.C_360117 N
Eucgr.I02017 Eucalyptus grandis Eucgr.I02017 I
evm.TU.contig_28309.2 Carica papaya evm.TU.contig_28309.2 I
e_gw1.141.66.1 Physcomitrella patens e_gw1.141.66.1 N
e_gw1.204.95.1 Physcomitrella patens e_gw1.204.95.1 N
e_gw1.284.46.1 Physcomitrella patens e_gw1.284.46.1 N
GLYMA13G04920 Glycine max GLYMA13G04920 I
GLYMA19G02090 Glycine max GLYMA19G02090 I
Gorai.010G139300 Gossypium raimondii Gorai.010G139300 N
GRMZM2G308034 Zea mays GRMZM2G308034 I
GSMUA_Achr3G10060_001 Musa acuminata GSMUA_Achr3G10060_001 I
gw1.295.9.1 Physcomitrella patens gw1.295.9.1 N
gw1.65.181.1 Physcomitrella patens gw1.65.181.1 N
LPERR03G12200 Leersia perrieri LPERR03G12200 I
MLOC_44167 Hordeum vulgare MLOC_44167 I
OB03G23760 Oryza brachyantha OB03G23760 I
OBART03G13840 Oryza barthii OBART03G13840 I
OGLUM03G13980 Oryza glumaepatula OGLUM03G13980 I
OMERI03G12640 Oryza meridionalis OMERI03G12640 I
ONIVA03G15100 Oryza nivara ONIVA03G15100 I
OPUNC03G13320 Oryza punctata OPUNC03G13320 I
orange1.1g043557m.g Citrus sinensis orange1.1g043557m.g I
ORGLA03G0133600 Oryza glaberrima ORGLA03G0133600 I
ORUFI03G14500 Oryza rufipogon ORUFI03G14500 I
Pavir.Db01456 Panicum virgatum Pavir.Db01456 I
PDK_20s1379331g001 Phoenix dactylifera PDK_20s1379331g001 I
POPTR_0012s07450 Populus trichocarpa POPTR_0012s07450 N
POPTR_0015s07900 Populus trichocarpa POPTR_0015s07900 N
SapurV1A.1048s0030 Salix purpurea SapurV1A.1048s0030 I
Sb01g038250 Sorghum bicolor Sb01g038250 I
TCM_045715 Theobroma cacao TCM_045715 N
Traes_7AL_5B57EF9FC Triticum aestivum Traes_7AL_5B57EF9FC I
Traes_7DL_20EC9096A Triticum aestivum Traes_7DL_20EC9096A I
VIT_17s0000g05400 Vitis vinifera VIT_17s0000g05400 I