Pavir.J07395 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J07395 T289340_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.730 0.835
MYB3R4
M07125_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R4_col_a 		0.713 0.806
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.699 0.799
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.699 0.799
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.689 0.813
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J07395.1.p Myb 48 94
Pavir.J07395.1.p Myb 100 146
Pavir.J07395.1.p Myb 152 196
Pavir.J07395.2.p Myb 48 94
Pavir.J07395.2.p Myb 100 146
Pavir.J07395.2.p Myb 152 196

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

101 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00009p00241540 Amborella trichopoda AMTR_s00009p00241540 N 0.000
Bo3g103450 Brassica oleracea Bo3g103450 N 0.000
Bostr.0568s0468 Boechera stricta Bostr.0568s0468 N 0.000
Bra038629 Brassica rapa Bra038629 N 0.000
Cagra.0248s0020 Capsella grandiflora Cagra.0248s0020 N 0.000
Ciclev10018763m.g Citrus clementina Ciclev10018763m.g N 0.000
Cla019560 Citrullus lanatus Cla019560 N 0.000
Cucsa.157420 Cucumis sativus Cucsa.157420 N 0.000
emb2746 Arabidopsis thaliana AT5G63420 N 0.000
emb2746 Vitis vinifera VIT_17s0000g01640 N 0.000
evm.TU.supercontig_13.140 Carica papaya evm.TU.supercontig_13.140 N 0.000
gene06358-v1.0-hybrid Fragaria vesca gene06358-v1.0-hybrid N 0.000
gene06360-v1.0-hybrid Fragaria vesca gene06360-v1.0-hybrid N 0.000
Gorai.001G059600 Gossypium raimondii Gorai.001G059600 N 0.000
Lus10016758.g Linum usitatissimum Lus10016758.g N 0.000
MDP0000313526 Malus domestica MDP0000313526 N 0.000
MDP0000574910 Malus domestica MDP0000574910 N 0.000
mgf010338m Mimulus guttatus mgf010338m N 0.000
orange1.1g016319m.g Citrus sinensis orange1.1g016319m.g N 0.000
orange1.1g040954m.g Citrus sinensis orange1.1g040954m.g N 0.000
Pm024489 Prunus mume Pm024489 N 0.000
POPTR_0012s09780 Populus trichocarpa POPTR_0012s09780 N 0.000
PRUPE_ppa001238mg Prunus persica PRUPE_ppa001238mg N 0.000
SapurV1A.0168s0020 Salix purpurea SapurV1A.0168s0020 N 0.000
SapurV1A.0841s0060 Salix purpurea SapurV1A.0841s0060 N 0.000
Thhalv10003624m.g Eutrema salsugineum Thhalv10003624m.g N 0.000