PK01305.1 (Cannabis sativa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 PK01305.1 T290338_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G24120
M00729_2.00 		Arabidopsis thaliana
NNKATDCBNN
NNVGHATMNN		 PBM
Chang et al.(2013)
pTH7086 		0.868 0.957
UNE16
M01270_2.00 		Arabidopsis thaliana
NWKATTCBNN
NNVGAATMWN		 PBM
Lambert et al.(2019)
pTH9967 		0.868 0.957
AT3G24120
M07085_2.00 		Arabidopsis thaliana
HAKATTCB
VGAATMTD		 Dap-seq
OMalley et al.(2016)
At3g24120_col_a 		0.868 0.957
AT3G24120
M07086_2.00 		Arabidopsis thaliana
NDRAAKATTCBHHN
NDDVGAATMTTYHN		 Dap-seq
OMalley et al.(2016)
At3g24120_colamp_a 		0.868 0.957
MYR1
M02309_2.00 		Arabidopsis thaliana
NKATNCBNNN
NNNVGNATMN		 PBM
Weirauch et al.(2014)
pTH8859 		0.802 0.830
MYR2
M02294_2.00 		Arabidopsis thaliana
NKATDCBNN
NNVGHATMN		 PBM
Weirauch et al.(2014)
pTH7097 		0.796 0.809
MYR2
M07063_2.00 		Arabidopsis thaliana
NNDAAKATTCYHHN
NDDRGAATMTTHNN		 Dap-seq
OMalley et al.(2016)
At3g04030_col_a 		0.796 0.809
MYR2
M07064_2.00 		Arabidopsis thaliana
VRAAKATTCBHWNNN
NNNWDVGAATMTTYB		 Dap-seq
OMalley et al.(2016)
At3g04030_colamp_a 		0.796 0.809
PHL12
M01077_2.00 		Arabidopsis thaliana
NWKATTCBNN
NNVGAATMWN		 PBM
Sullivan et al.(2014)
pTH7098 		0.790 0.915
PHL12
M07079_2.00 		Arabidopsis thaliana
RGAATATTCYYTWN
NWARRGAATATTCY		 Dap-seq
OMalley et al.(2016)
At3g12730_col_a 		0.790 0.915
PHL12
M07080_2.00 		Arabidopsis thaliana
NNRAAKATTCBHHN
NDDVGAATMTTYNN		 Dap-seq
OMalley et al.(2016)
At3g12730_colamp_a 		0.790 0.915
PHL11
M07134_2.00 		Arabidopsis thaliana
NNRAAKATTCYHHN
NDDRGAATMTTYNN		 Dap-seq
OMalley et al.(2016)
AT5G45580_col_a 		0.779 0.787
PHL11
M07135_2.00 		Arabidopsis thaliana
NRAAKATTCYHHNN
NNDDRGAATMTTYN		 Dap-seq
OMalley et al.(2016)
AT5G45580_colamp_a 		0.779 0.787
PHL7
M02292_2.00 		Arabidopsis thaliana
NWGATDCBNN
NNVGHATCWN		 PBM
Weirauch et al.(2014)
pTH7253 		0.779 0.830
PK10342.1
M02351_2.00 		Cannabis sativa
WAGATKCS
SGMATCTW		 PBM
Weirauch et al.(2014)
pTH9489 		0.779 0.830
PHL7
M07040_2.00 		Arabidopsis thaliana
DRNAKATTCBNHNNN
NNNDNVGAATMTNYH		 Dap-seq
OMalley et al.(2016)
At2g01060_colamp_a 		0.779 0.830
PHL7
M07041_2.00 		Arabidopsis thaliana
VGAATATTCBNHH
DDNVGAATATTCB		 Dap-seq
OMalley et al.(2016)
At2g01060_col 		0.779 0.830
Q5IWM2_WHEAT
M11059_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYB80_01 		0.707 0.723
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK01305.1 Myb 60 111

Links

Other Myb/SANT family TFs
Other Cannabis sativa TFs

800 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGOS_AGL141W Ashbya gossypii AGOS_AGL141W I
BN7_2978 Wickerhamomyces ciferrii BN7_2978 I
CAGL0E00737g Candida glabrata CAGL0E00737g I
CANTEDRAFT_115813 Candida tenuis CANTEDRAFT_115813 N
CORT_0D04800 Candida orthopsilosis CORT_0D04800 I
CPAG_04110 Candida parapsilosis CPAG_04110 I
DEHA2G23694g Debaryomyces hansenii DEHA2G23694g N
Ecym_4194 Eremothecium cymbalariae Ecym_4194 I
estExt_fgenesh1_pg.C_chr_2.10534 Pichia stipitis estExt_fgenesh1_pg.C_chr_2.10534 I
GNLVRS01_PISO0I16552g Millerozyma farinosa GNLVRS01_PISO0I16552g N
KLTH0F09020g Kluyveromyces thermotolerans KLTH0F09020g I
KLTH0F09020g Lachancea thermotolerans KLTH0F09020g I
Kpol_1024p24 Vanderwaltozyma polyspora Kpol_1024p24 I
NCAS_0B03190 Naumovozyma castellii NCAS_0B03190 I
NDAI_0A01190 Naumovozyma dairenensis NDAI_0A01190 I
PGUG_04087 Meyerozyma guilliermondii PGUG_04087 I
PGUG_04087 Candida guilliermondii PGUG_04087 I
PICST_66957 Scheffersomyces stipitis PICST_66957 I
Scas_Contig682.13 Saccharomyces castellii Scas_Contig682.13 I
SPAPADRAFT_49202 Spathaspora passalidarum SPAPADRAFT_49202 I
TBLA_0A01170 Tetrapisispora blattae TBLA_0A01170 I
TDEL_0F04960 Torulaspora delbrueckii TDEL_0F04960 I
TPHA_0C02460 Tetrapisispora phaffii TPHA_0C02460 I
ZYRO0C03718g Zygosaccharomyces rouxii ZYRO0C03718g I