estExt_fgenesh1_pg.C_chr_2.10534 (Pichia stipitis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 estExt_fgenesh1_pg.C_chr_2.10534 T334002_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
orf19.6645
M11339_2.00 		Candida albicans Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$HMO1CA_01 		0.468 0.507
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh1_pg.C_chr_2.10534 Sox 90 163

Links

Other Sox family TFs
Other Pichia stipitis TFs

19 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PICST_66957 Scheffersomyces stipitis PICST_66957 I 0.741
SPAPADRAFT_49202 Spathaspora passalidarum SPAPADRAFT_49202 I 0.614
PGUG_04087 Candida guilliermondii PGUG_04087 I 0.605
PGUG_04087 Meyerozyma guilliermondii PGUG_04087 I 0.605
CANTEDRAFT_115813 Candida tenuis CANTEDRAFT_115813 N 0.568
CORT_0D04800 Candida orthopsilosis CORT_0D04800 I 0.495
CPAG_04110 Candida parapsilosis CPAG_04110 I 0.489
CLUG_02468 Candida lusitaniae CLUG_02468 N 0.484
CLUG_02468 Clavispora lusitaniae CLUG_02468 N 0.484
GNLVRS01_PISO0I16552g Millerozyma farinosa GNLVRS01_PISO0I16552g N 0.475
GNLVRS01_PISO0J18313g Millerozyma farinosa GNLVRS01_PISO0J18313g N 0.475
DEHA2G23694g Debaryomyces hansenii DEHA2G23694g N 0.471
LELG_03232 Lodderomyces elongisporus LELG_03232 N 0.469
CaO19.13966 Candida albicans CaO19.13966 I 0.468
CaO19.6645 Candida albicans CaO19.6645 I 0.468
CD36_31040 Candida dubliniensis CD36_31040 I 0.468
orf19.6645 Candida albicans orf19.6645 D 0.468
CTRG_00596 Candida tropicalis CTRG_00596 I 0.449
G210_0850 Candida maltosa G210_0850 I 0.445