Bra005804 (Brassica rapa)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 Bra005804 T292539_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC078
M02372_2.00 		Arabidopsis thaliana
NNRCAMGHMANN
NNTKDCKTGYNN		 PBM
Weirauch et al.(2014)
pTH7209 		0.961 0.974
NAC078
M07226_2.00 		Arabidopsis thaliana
TTDCTTGNDNNDCAAG
CTTGHNNHNCAAGHAA		 Dap-seq
OMalley et al.(2016)
NAC2_colamp_a 		0.961 0.974
NAC078
M07227_2.00 		Arabidopsis thaliana
DTTWCTTGNNNNRCAAG
CTTGYNNNNCAAGWAAH		 Dap-seq
OMalley et al.(2016)
NAC2_col_v3a 		0.961 0.974
NAC078
M11083_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$NAC078_Q2 		0.961 0.974
NAC053
M07202_2.00 		Arabidopsis thaliana
TTWCTTGNNNVRCAAG
CTTGYBNNNCAAGWAA		 Dap-seq
OMalley et al.(2016)
ANAC053_colamp_a 		0.954 0.956
NAC053
M07203_2.00 		Arabidopsis thaliana
TTWCTTGNNNVRCAAGH
DCTTGYBNNNCAAGWAA		 Dap-seq
OMalley et al.(2016)
ANAC053_col 		0.954 0.956
NAC053
M11079_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT3G10500_Q2 		0.954 0.956
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra005804.1-P NAC/NAM 10 136

Links

Other NAC/NAM family TFs
Other Brassica rapa TFs

38 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30076.m004659 Ricinus communis 30076.m004659 I 0.000
30131.m007078 Ricinus communis 30131.m007078 I 0.000
Aquca_003_00556 Aquilegia coerulea Aquca_003_00556 I 0.000
Aquca_022_00003 Aquilegia coerulea Aquca_022_00003 I 0.000
ATBZIP53 Arabidopsis lyrata fgenesh2_kg.5__2740__AT3G62420.1 I 0.000
Bo6g079450 Brassica oleracea Bo6g079450 I 0.000
Bo8g097830 Brassica oleracea Bo8g097830 I 0.000
Bra003500 Brassica rapa Bra003500 I 0.000
Bra007679 Brassica rapa Bra007679 I 0.000
Bra039631 Brassica rapa Bra039631 I 0.000
BRADI2G38380 Brachypodium distachyon BRADI2G38380 N 0.000
BZIP53 Arabidopsis thaliana AT3G62420 D 0.000
Cagra.0483s0006 Capsella grandiflora Cagra.0483s0006 I 0.000
Carubv10018852m.g Capsella rubella Carubv10018852m.g I 0.000
cassava23775.valid.m1 Manihot esculenta cassava23775.valid.m1 I 0.000
cassava24775.valid.m1 Manihot esculenta cassava24775.valid.m1 I 0.000
cassava36049.valid.m1 Manihot esculenta cassava36049.valid.m1 I 0.000
cassava40461.m1 Manihot esculenta cassava40461.m1 I 0.000
Ca_01004 Cicer arietinum Ca_01004 I 0.000
Ca_03512 Cicer arietinum Ca_03512 I 0.000
Ciclev10002731m.g Citrus clementina Ciclev10002731m.g N 0.000
Ciclev10022730m.g Citrus clementina Ciclev10022730m.g I 0.000
Ciclev10029834m.g Citrus clementina Ciclev10029834m.g I 0.000
Cla016841 Citrullus lanatus Cla016841 I 0.000
Cucsa.109420 Cucumis sativus Cucsa.109420 I 0.000
Eucgr.G01645 Eucalyptus grandis Eucgr.G01645 N 0.000
Eucgr.L01789 Eucalyptus grandis Eucgr.L01789 N 0.000
evm.TU.supercontig_18.43 Carica papaya evm.TU.supercontig_18.43 I 0.000
evm.TU.supercontig_538.1 Carica papaya evm.TU.supercontig_538.1 I 0.000
gene21832-v1.0-hybrid Fragaria vesca gene21832-v1.0-hybrid I 0.000
GLYMA03G37790 Glycine max GLYMA03G37790 I 0.000
GLYMA11G12240 Glycine max GLYMA11G12240 I 0.000
GLYMA12G04440 Glycine max GLYMA12G04440 I 0.000
GLYMA19G40390 Glycine max GLYMA19G40390 I 0.000
Gorai.001G144200 Gossypium raimondii Gorai.001G144200 I 0.000
Gorai.007G122800 Gossypium raimondii Gorai.007G122800 I 0.000
Gorai.008G065300 Gossypium raimondii Gorai.008G065300 I 0.000
GSMUA_Achr11G05140_001 Musa acuminata GSMUA_Achr11G05140_001 I 0.000
GSMUA_Achr11G20700_001 Musa acuminata GSMUA_Achr11G20700_001 I 0.000
GSMUA_Achr1G12710_001 Musa acuminata GSMUA_Achr1G12710_001 I 0.000
GSMUA_Achr1G25340_001 Musa acuminata GSMUA_Achr1G25340_001 I 0.000
GSMUA_Achr4G03790_001 Musa acuminata GSMUA_Achr4G03790_001 I 0.000
GSMUA_Achr8G29960_001 Musa acuminata GSMUA_Achr8G29960_001 I 0.000
Lus10010005.g Linum usitatissimum Lus10010005.g I 0.000
Lus10040428.g Linum usitatissimum Lus10040428.g I 0.000
MDP0000205823 Malus domestica MDP0000205823 I 0.000
MDP0000234798 Malus domestica MDP0000234798 I 0.000
MDP0000239026 Malus domestica MDP0000239026 I 0.000
MDP0000437680 Malus domestica MDP0000437680 I 0.000
MDP0000949327 Malus domestica MDP0000949327 I 0.000
mgf003466m Mimulus guttatus mgf003466m I 0.000
mgf018581m Mimulus guttatus mgf018581m I 0.000
mgf022473m Mimulus guttatus mgf022473m N 0.000
MTR_1g087040 Medicago truncatula MTR_1g087040 I 0.000
orange1.1g032187m.g Citrus sinensis orange1.1g032187m.g I 0.000
orange1.1g041765m.g Citrus sinensis orange1.1g041765m.g N 0.000
orange1.1g044691m.g Citrus sinensis orange1.1g044691m.g I 0.000
Pavir.Ca00746 Panicum virgatum Pavir.Ca00746 N 0.000
PGSC0003DMG400003529 Solanum tuberosum PGSC0003DMG400003529 I 0.000
PGSC0003DMG400022589 Solanum tuberosum PGSC0003DMG400022589 I 0.000
PGSC0003DMG400030946 Solanum tuberosum PGSC0003DMG400030946 I 0.000
PK03779.1 Cannabis sativa PK03779.1 I 0.000
PK07533.1 Cannabis sativa PK07533.1 I 0.000
POPTR_0002s19720 Populus trichocarpa POPTR_0002s19720 I 0.000
POPTR_0004s16560 Populus trichocarpa POPTR_0004s16560 I 0.000
POPTR_0009s12250 Populus trichocarpa POPTR_0009s12250 I 0.000
POPTR_0014s11590 Populus trichocarpa POPTR_0014s11590 I 0.000
PRUPE_ppa013046mg Prunus persica PRUPE_ppa013046mg I 0.000
SapurV1A.0158s0220 Salix purpurea SapurV1A.0158s0220 I 0.000
SapurV1A.0396s0080 Salix purpurea SapurV1A.0396s0080 I 0.000
SapurV1A.0432s0050 Salix purpurea SapurV1A.0432s0050 I 0.000
SapurV1A.3521s0020 Salix purpurea SapurV1A.3521s0020 I 0.000
Si023562m.g Setaria italica Si023562m.g N 0.000
Solyc01g109880.2 Solanum lycopersicum Solyc01g109880.2 I 0.000
Solyc02g084860.1 Solanum lycopersicum Solyc02g084860.1 I 0.000
Solyc03g033730.1 Solanum lycopersicum Solyc03g033730.1 I 0.000
TCM_004807 Theobroma cacao TCM_004807 I 0.000
Thhalv10006418m.g Eutrema salsugineum Thhalv10006418m.g I 0.000
VIT_03s0038g04450 Vitis vinifera VIT_03s0038g04450 I 0.000