Pavir.J21394 (Panicum virgatum)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Pavir.J21394 T298980_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANAC087
M07232_2.00 		Arabidopsis thaliana
TDNCKTSHNNNDYACGYHANB
VNTDRCGTRHNNNDSAMGNHA		 Dap-seq
OMalley et al.(2016)
ANAC087_colamp_a 		0.877 0.746
ANAC087
M07233_2.00 		Arabidopsis thaliana
TWNCKTGWNNNDCAMGYHA
TDRCKTGHNNNWCAMGNWA		 Dap-seq
OMalley et al.(2016)
ANAC087_col_v3a 		0.877 0.746
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J21394.1.p NAC/NAM 17 148

Links

Other NAC/NAM family TFs
Other Panicum virgatum TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29950.m001171 Ricinus communis 29950.m001171 I 0.881
ANAC087 Arabidopsis thaliana AT5G18270 D 0.888
ANAC087 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001462 I 0.877
Aquca_014_00944 Aquilegia coerulea Aquca_014_00944 I 0.877
BGIOSGA034716 Oryza indica BGIOSGA034716 N 0.929
Bo2g015440 Brassica oleracea Bo2g015440 I 0.874
Bo3g013050 Brassica oleracea Bo3g013050 I 0.874
Bostr.26527s0381 Boechera stricta Bostr.26527s0381 I 0.878
Bra006449 Brassica rapa Bra006449 I 0.874
Bra023669 Brassica rapa Bra023669 I 0.874
BRADI1G63630 Brachypodium distachyon BRADI1G63630 I 0.874
Cagra.0906s0022 Capsella grandiflora Cagra.0906s0022 I 0.879
Carubv10001373m.g Capsella rubella Carubv10001373m.g I 0.879
cassava25877.m1 Manihot esculenta cassava25877.m1 I 0.882
Ca_08255 Cicer arietinum Ca_08255 I 0.897
chr1.CM0104.260.nc Lotus japonicus chr1.CM0104.260.nc I 0.898
Cla012339 Citrullus lanatus Cla012339 I 0.904
Cucsa.002980 Cucumis sativus Cucsa.002980 I 0.883
Eucgr.A02074 Eucalyptus grandis Eucgr.A02074 I 0.898
evm.TU.supercontig_594.1 Carica papaya evm.TU.supercontig_594.1 I 0.886
F775_16032 Aegilops tauschii F775_16032 I 0.874
F775_24687 Aegilops tauschii F775_24687 I 0.873
F775_26964 Aegilops tauschii F775_26964 N 0.938
F775_29256 Aegilops tauschii F775_29256 I 0.882
gene20686-v1.0-hybrid Fragaria vesca gene20686-v1.0-hybrid I 0.875
GLYMA02G07760 Glycine max GLYMA02G07760 I 0.876
GLYMA16G04720 Glycine max GLYMA16G04720 I 0.895
GLYMA16G26810 Glycine max GLYMA16G26810 I 0.876
GLYMA19G28515 Glycine max GLYMA19G28515 I 0.895
Gorai.007G267700 Gossypium raimondii Gorai.007G267700 I 0.885
Gorai.013G118000 Gossypium raimondii Gorai.013G118000 I 0.874
GRMZM2G018436 Zea mays GRMZM2G018436 N 0.948
GRMZM2G159500 Zea mays GRMZM2G159500 I 0.881
GRMZM6G257110 Zea mays GRMZM6G257110 N 0.938
GSMUA_Achr3G09520_001 Musa acuminata GSMUA_Achr3G09520_001 I 0.906
GSMUA_Achr5G07600_001 Musa acuminata GSMUA_Achr5G07600_001 I 0.900
GSMUA_Achr6G08600_001 Musa acuminata GSMUA_Achr6G08600_001 I 0.884
GSMUA_Achr6G32290_001 Musa acuminata GSMUA_Achr6G32290_001 I 0.879
GSMUA_Achr7G18330_001 Musa acuminata GSMUA_Achr7G18330_001 I 0.871
GSMUA_Achr8G21470_001 Musa acuminata GSMUA_Achr8G21470_001 I 0.874
GSMUA_Achr9G16920_001 Musa acuminata GSMUA_Achr9G16920_001 I 0.872
MLOC_5832 Hordeum vulgare MLOC_5832 N 0.930
MLOC_64057 Hordeum vulgare MLOC_64057 N 0.877
MLOC_72737 Hordeum vulgare MLOC_72737 I 0.878
OBART11G01610 Oryza barthii OBART11G01610 N 0.929
OGLUM11G01340 Oryza glumaepatula OGLUM11G01340 N 0.929
OPUNC11G01340 Oryza punctata OPUNC11G01340 N 0.930
OS11G0127600 Oryza sativa OS11G0127600 N 0.929
Pavir.Ba02955 Panicum virgatum Pavir.Ba02955 I 0.874
Pavir.Bb02033 Panicum virgatum Pavir.Bb02033 I 0.872
Pavir.J13094 Panicum virgatum Pavir.J13094 I 0.875
Pavir.J39049 Panicum virgatum Pavir.J39049 I 0.975
Pm025307 Prunus mume Pm025307 I 0.876
POPTR_0019s04710 Populus trichocarpa POPTR_0019s04710 I 0.874
PRUPE_ppa005770mg Prunus persica PRUPE_ppa005770mg I 0.879
SapurV1A.0308s0280 Salix purpurea SapurV1A.0308s0280 I 0.880
SapurV1A.2283s0010 Salix purpurea SapurV1A.2283s0010 I 0.880
Sb01g036590 Sorghum bicolor Sb01g036590 I 0.878
Sb05g001590 Sorghum bicolor Sb05g001590 N 0.955
Si010417m.g Setaria italica Si010417m.g N 0.964
TCM_026028 Theobroma cacao TCM_026028 I 0.885
Thhalv10014060m.g Eutrema salsugineum Thhalv10014060m.g I 0.872
TRAES3BF020100120CFD_g Triticum aestivum TRAES3BF020100120CFD_g I 0.893
Traes_3AS_4220612F3 Triticum aestivum Traes_3AS_4220612F3 I 0.883
Traes_3DS_930F3B5AD Triticum aestivum Traes_3DS_930F3B5AD I 0.873
Traes_4AS_B95A1C3A1 Triticum aestivum Traes_4AS_B95A1C3A1 I 0.878
Traes_4BL_B92B51F5D Triticum aestivum Traes_4BL_B92B51F5D I 0.878
Traes_4DL_D84567626 Triticum aestivum Traes_4DL_D84567626 I 0.882
Traes_5AL_373E730BB Triticum aestivum Traes_5AL_373E730BB I 0.878
Traes_5BL_420974D47 Triticum aestivum Traes_5BL_420974D47 N 0.930
TRIUR3_14541 Triticum urartu TRIUR3_14541 N 0.930
TRIUR3_23644 Triticum urartu TRIUR3_23644 I 0.889
TRIUR3_35152 Triticum urartu TRIUR3_35152 I 0.878
VIT_08s0007g07640 Vitis vinifera VIT_08s0007g07640 I 0.882