HNF4G (Cavia porcellus)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 ENSCPOG00000011625 T302770_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HNF4G
M08155_2.00
Homo sapiens
NVRGDNCAAAGKYCA

TGRMCTTTGNHCYBN
ChIP-seq
Mathelier et al.(2014)
MA0484.1
0.995 1.000
HNF4G
M09287_2.00
Homo sapiens
VRGDNCAAAGKYCA

TGRMCTTTGNHCYB
Misc
Kulakovskiy et al.(2013)
HNF4G_HUMAN.H11MO.0.B
0.995 1.000
Hnf4g
M09307_2.00
Mus musculus
VRGDNCAAAGKYCA

TGRMCTTTGNHCYB
Misc
Kulakovskiy et al.(2013)
HNF4G_MOUSE.H11MO.0.C
0.995 1.000
HNF4G
M11155_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4G_01
0.995 1.000
HNF4G
M11156_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4G_02
0.995 1.000
Hnf4
M03935_2.00
Drosophila melanogaster
RGGKCAAAGGTCA

TGACCTTTGMCCY
SELEX
Nitta et al.(2015)
Hnf4_1
0.994 0.871
Hnf4
M03936_2.00
Drosophila melanogaster
RGGKCAAAGTYCA

TGRACTTTGMCCY
SELEX
Nitta et al.(2015)
Hnf4_2
0.994 0.871
Hnf4
M03937_2.00
Drosophila melanogaster
RGTVCAAAGKTCR

YGAMCTTTGBACY
SELEX
Nitta et al.(2015)
Hnf4_3
0.994 0.871
Hnf4
M03938_2.00
Drosophila melanogaster
RTGRACTTTGGACY

RGTCCAAAGTYCAY
SELEX
Nitta et al.(2015)
Hnf4_4
0.994 0.871
Hnf4
M06428_2.00
Drosophila melanogaster
DKNKWSSNGGGGTCA

TGACCCCNSSWMNMH
B1H
Zhu et al.(2011)
Hnf4_SANGER_10_FBgn0004914
0.994 0.871
Hnf4
M06429_2.00
Drosophila melanogaster
GGGGTCAH

DTGACCCC
B1H
Zhu et al.(2011)
Hnf4_SANGER_5_FBgn0004914
0.994 0.871
Hnf4a
M00182_2.00
Mus musculus
NNRGKYMRNN

NNYKRMCYNN
PBM
Badis et al.(2009)
Hnf4a_2640
0.994 0.929
HNF4A
M03357_2.00
Homo sapiens
RWTGRACTTTGSACYB

VRGTSCAAAGTYCAWY
SELEX
Jolma et al.(2013)
HNF4A_1
0.994 0.929
HNF4A
M03358_2.00
Homo sapiens
RRGGKCAAAGTCCRBN

NVYGGACTTTGMCCYY
SELEX
Jolma et al.(2013)
HNF4A_2
0.994 0.929
HNF4A
M03359_2.00
Homo sapiens
NDTGGACTTTGDACYB

VRGTHCAAAGTCCAHN
SELEX
Jolma et al.(2013)
HNF4A_3
0.994 0.929
HNF4A
M03360_2.00
Homo sapiens
RRGGTCAAAGKTCA

TGAMCTTTGACCYY
SELEX
Jolma et al.(2013)
HNF4A_4
0.994 0.929
HNF4A
M03361_2.00
Homo sapiens
VRGGTCAAAGTCCANN

NNTGGACTTTGACCYB
SELEX
Jolma et al.(2013)
HNF4A_5
0.994 0.929
HNF4A
M03362_2.00
Homo sapiens
RRGTYCAAAGKTCAH

DTGAMCTTTGRACYY
SELEX
Jolma et al.(2013)
HNF4A_6
0.994 0.929
Hnf4a
M03426_2.00
Mus musculus
RRGGTCAAAGTCCANN

NNTGGACTTTGACCYY
SELEX
Jolma et al.(2013)
Hnf4a_1
0.994 0.929
HNF4A
M05573_2.00
Homo sapiens
RRGGTCAAAGGTCRN

NYGACCTTTGACCYY
SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_1
0.994 0.929
HNF4A
M05574_2.00
Homo sapiens
RRGGTCAAAGTCCAH

DTGGACTTTGACCYY
SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_2
0.994 0.929
HNF4A
M05575_2.00
Homo sapiens
RRGTCCAAAGGTCRN

NYGACCTTTGGACYY
SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_3
0.994 0.929
HNF4A
M05576_2.00
Homo sapiens
DTGGACTTTGGACYY

RRGTCCAAAGTCCAH
SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_4
0.994 0.929
HNF4A
M08219_2.00
Homo sapiens
VRGDBCAAAGKYCAN

NTGRMCTTTGVHCYB
ChIP-seq
Contrino et al.(2012)
Mv81
0.994 0.929
HNF4A
M08220_2.00
Homo sapiens
AGTCCA

TGGACT
ChIP-seq
Contrino et al.(2012)
Mv82
0.994 0.929
HNF4A
M09268_2.00
Homo sapiens
VRGKNCAAAGTYCA

TGRACTTTGNMCYB
Misc
Kulakovskiy et al.(2013)
HNF4A_HUMAN.H11MO.0.A
0.994 0.929
Hnf4a
M09308_2.00
Mus musculus
NRGKBCAAAGTYCA

TGRACTTTGVMCYN
Misc
Kulakovskiy et al.(2013)
HNF4A_MOUSE.H11MO.0.A
0.994 0.929
HNF4A
M09605_2.00
Homo sapiens
NNVRGDNCAAAGKYCA

TGRMCTTTGNHCYBNN
Misc
Heinz et al.(2010)
HepG2-HNF4a_GSE25021
0.994 0.929
HNF4A
M11105_2.00
Homo sapiens
VRGGNCAAAGKYCRB

VYGRMCTTTGNCCYB
Transfac
Matys et al.(2006)
V$HNF4_01_B
0.994 0.929
HNF4A
M11106_2.00
Homo sapiens
NNNRGDBYAAAGKBCANND

HNNTGVMCTTTRVHCYNNN
Transfac
Matys et al.(2006)
V$HNF4_01
0.994 0.929
HNF4A
M11107_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4A_09
0.994 0.929
HNF4A
M11108_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4A_10
0.994 0.929
HNF4A
M11109_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4ALPHA_Q6
0.994 0.929
HNF4A
M11110_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4A_Q3
0.994 0.929
HNF4A
M11111_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4A_Q6_01
0.994 0.929
HNF4A
M11112_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4_Q6_01
0.994 0.929
HNF4A
M11113_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4_Q6_02
0.994 0.929
HNF4A
M11114_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4_Q6_03
0.994 0.929
HNF4A
M11115_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4_Q6_04
0.994 0.929
HNF4A
M05577_2.00
Homo sapiens
RRGGTCAAAGGTCRN

NYGACCTTTGACCYY
SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_1
0.994 0.929
HNF4A
M05578_2.00
Homo sapiens
RRGGTCAAAGTCCRN

NYGGACTTTGACCYY
SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_2
0.994 0.929
HNF4A
M05579_2.00
Homo sapiens
RRGTCCAAAGGTCRN

NYGACCTTTGGACYY
SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_3
0.994 0.929
HNF4A
M05580_2.00
Homo sapiens
DTGGACTTTGGACYY

RRGTCCAAAGTCCAH
SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_4
0.994 0.929
NR6A1
M05627_2.00
Homo sapiens
NNSAAGKTCAAGKKYRN

NYRMMCTTGAMCTTSNN
SELEX
Yin et al.(2017)
NR6A1_eDBD_HT-SELEX
0.851 0.557
NR6A1
M09284_2.00
Homo sapiens
AAGKTCAAGKTCA

TGAMCTTGAMCTT
Misc
Kulakovskiy et al.(2013)
NR6A1_HUMAN.H11MO.0.B
0.851 0.557
NR6A1
M11148_2.00
Homo sapiens
NKCAAGKTCAAGKTCANN

NNTGAMCTTGAMCTTGMN
Transfac
Matys et al.(2006)
V$GCNF_01
0.851 0.557
NR6A1
M11149_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCNF_Q3
0.851 0.557
NR6A1
M05628_2.00
Homo sapiens
NYSAAGKTCAAGKKCRN

NYGMMCTTGAMCTTSRN
SELEX
Yin et al.(2017)
NR6A1_eDBD_Methyl-HT-SELEX
0.851 0.557
nhr-49
M02413_2.00
Caenorhabditis elegans
NNNNWNHAN

NTDNWNNNN
PBM
Weirauch et al.(2014)
pTH5891
0.824 0.543
NR2F6
M02396_2.00
Homo sapiens
NNRGGTCR

YGACCYNN
PBM
Weirauch et al.(2014)
pTH6747
0.787 0.571
NR2F6
M03386_2.00
Homo sapiens
RRGGTCAAAAGGTCA

TGACCTTTTGACCYY
SELEX
Jolma et al.(2013)
NR2F6_1
0.787 0.571
NR2F6
M03387_2.00
Homo sapiens
RRGGTCAAAGGTCA

TGACCTTTGACCYY
SELEX
Jolma et al.(2013)
NR2F6_2
0.787 0.571
NR2F6
M03388_2.00
Homo sapiens
NRGGTCAAAGGTCA

TGACCTTTGACCYN
SELEX
Jolma et al.(2013)
NR2F6_3
0.787 0.571
NR2F6
M05641_2.00
Homo sapiens
RRGGTCAAAGGTCAN

NTGACCTTTGACCYY
SELEX
Yin et al.(2017)
NR2F6_eDBD_HT-SELEX_1
0.787 0.571
NR2F6
M05642_2.00
Homo sapiens
RAGGTCANTGACCTY

RAGGTCANTGACCTY
SELEX
Yin et al.(2017)
NR2F6_eDBD_HT-SELEX_2
0.787 0.571
NR2F6
M05645_2.00
Homo sapiens
NRGGTCARAGGTCRN

NYGACCTYTGACCYN
SELEX
Yin et al.(2017)
NR2F6_FL_HT-SELEX_1
0.787 0.571
NR2F6
M05646_2.00
Homo sapiens
NRGGTCANYGACCYY

RRGGTCRNTGACCYN
SELEX
Yin et al.(2017)
NR2F6_FL_HT-SELEX_2
0.787 0.571
NR2F6
M11153_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EAR2_Q2
0.787 0.571
NR2F6
M11154_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EAR2_Q4
0.787 0.571
NR2F6
M05643_2.00
Homo sapiens
RRGGTCAAAGGTCRN

NYGACCTTTGACCYY
SELEX
Yin et al.(2017)
NR2F6_eDBD_Methyl-HT-SELEX_1
0.787 0.571
NR2F6
M05644_2.00
Homo sapiens
RRGGTCRNYGACCYY

RRGGTCRNYGACCYY
SELEX
Yin et al.(2017)
NR2F6_eDBD_Methyl-HT-SELEX_2
0.787 0.571
NR2F6
M05647_2.00
Homo sapiens
NRGGTYADRGGKBRN

NYVMCCYHTRACCYN
SELEX
Yin et al.(2017)
NR2F6_FL_Methyl-HT-SELEX_1
0.787 0.571
NR2F6
M05648_2.00
Homo sapiens
NRGGTCANYGACCYN

NRGGTCRNTGACCYN
SELEX
Yin et al.(2017)
NR2F6_FL_Methyl-HT-SELEX_2
0.787 0.571
nr2f2
M02393_2.00
Danio rerio
NNRGGTCAN

NTGACCYNN
PBM
Weirauch et al.(2014)
pTH5882
0.787 0.514
Nr2f1
M00822_2.00
Mus musculus
DRGGTCRN

NYGACCYH
PBM
Weirauch et al.(2013)
pTH3811
0.787 0.514
NR2F1
M03403_2.00
Homo sapiens
RRGGTCAAAGGTCAN

NTGACCTTTGACCYY
SELEX
Jolma et al.(2013)
NR2F1_1
0.787 0.514
NR2F1
M03404_2.00
Homo sapiens
RRGGTCAARAGGTCAN

NTGACCTYTTGACCYY
SELEX
Jolma et al.(2013)
NR2F1_2
0.787 0.514
NR2F1
M03405_2.00
Homo sapiens
RRGGTCAN

NTGACCYY
SELEX
Jolma et al.(2013)
NR2F1_3
0.787 0.514
NR2F1
M03406_2.00
Homo sapiens
NHRRGGTCANVNG

CNBNTGACCYYDN
SELEX
Jolma et al.(2013)
NR2F1_4
0.787 0.514
NR2F1
M05661_2.00
Homo sapiens
NRGGTCAAAGGTCRN

NYGACCTTTGACCYN
SELEX
Yin et al.(2017)
NR2F1_eDBD_HT-SELEX_1
0.787 0.514
NR2F1
M05662_2.00
Homo sapiens
VRGGTCANYGACCYY

RRGGTCRNTGACCYB
SELEX
Yin et al.(2017)
NR2F1_eDBD_HT-SELEX_2
0.787 0.514
NR2F1
M05665_2.00
Homo sapiens
VRGGTCAAAGGTCAN

NTGACCTTTGACCYB
SELEX
Yin et al.(2017)
NR2F1_FL_HT-SELEX_1
0.787 0.514
NR2F1
M05666_2.00
Homo sapiens
RRGGTCANYGACCYY

RRGGTCRNTGACCYY
SELEX
Yin et al.(2017)
NR2F1_FL_HT-SELEX_2
0.787 0.514
NR2F1
M09291_2.00
Homo sapiens
NRRRBSRRRGGKCANVN

NBNTGMCCYYYSVYYYN
Misc
Kulakovskiy et al.(2013)
COT1_HUMAN.H11MO.0.C
0.787 0.514
Nr2f1
M09334_2.00
Mus musculus
YARAGGTCA

TGACCTYTR
Misc
Kulakovskiy et al.(2013)
COT1_MOUSE.H11MO.0.B
0.787 0.514
NR2F1
M11172_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$COUPTF1_Q6_01
0.787 0.514
NR2F1
M05663_2.00
Homo sapiens
NRGGTCAAAGGTCRN

NYGACCTTTGACCYN
SELEX
Yin et al.(2017)
NR2F1_eDBD_Methyl-HT-SELEX_1
0.787 0.514
NR2F1
M05664_2.00
Homo sapiens
NRGGTCANYGACCYH

DRGGTCRNTGACCYN
SELEX
Yin et al.(2017)
NR2F1_eDBD_Methyl-HT-SELEX_2
0.787 0.514
NR2F1
M05667_2.00
Homo sapiens
NRGGTCAAAGGTCRN

NYGACCTTTGACCYN
SELEX
Yin et al.(2017)
NR2F1_FL_Methyl-HT-SELEX_1
0.787 0.514
NR2F1
M05668_2.00
Homo sapiens
RRGGTCRNYGACCYY

RRGGTCRNYGACCYY
SELEX
Yin et al.(2017)
NR2F1_FL_Methyl-HT-SELEX_2
0.787 0.514
Nr2f2
M00184_2.00
Mus musculus
RRGGTCAN

NTGACCYY
PBM
Badis et al.(2009)
Nr2f2_2192
0.781 0.514
NR2F2
M08157_2.00
Homo sapiens
NNAAGGTCANN

NNTGACCTTNN
ChIP-seq
Mathelier et al.(2014)
MA1111.1
0.781 0.514
NR2F2
M08223_2.00
Homo sapiens
AAAGGTCA

TGACCTTT
ChIP-seq
Contrino et al.(2012)
Mv102
0.781 0.514
NR2F2
M08224_2.00
Homo sapiens
GGKCARAGGB

VCCTYTGMCC
ChIP-seq
Contrino et al.(2012)
Mv104
0.781 0.514
NR2F2
M09293_2.00
Homo sapiens
NARRGGTCADRDN

NHYHTGACCYYTN
Misc
Kulakovskiy et al.(2013)
COT2_HUMAN.H11MO.0.A
0.781 0.514
Nr2f2
M09325_2.00
Mus musculus
NNHRAGGTCANVD

HBNTGACCTYDNN
Misc
Kulakovskiy et al.(2013)
COT2_MOUSE.H11MO.0.A
0.781 0.514
NR2F2
M11180_2.00
Homo sapiens
WRRKKTCAARGGYTCA

TGARCCYTTGAMMYYW
Transfac
Matys et al.(2006)
V$ARP1_01
0.781 0.514
NR2F2
M11181_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$COUPTF2_Q6
0.781 0.514
svp
M06423_2.00
Drosophila melanogaster
ARGGTCA

TGACCYK
B1H
Zhu et al.(2011)
svp_SANGER_5_FBgn0003651
0.778 0.543
tll
M02408_2.00
Drosophila melanogaster
NRASGTCAANNN

NNNTTGACSTYN
PBM
Weirauch et al.(2014)
pTH5714
0.765 0.614
tll
M03932_2.00
Drosophila melanogaster
NRAGTCAAAAGTCA

TGACTTTTGACTYN
SELEX
Nitta et al.(2015)
tll_1
0.765 0.614
tll
M03933_2.00
Drosophila melanogaster
NRAGTCAADAAGTCA

TGACTTHTTGACTYN
SELEX
Nitta et al.(2015)
tll_2
0.765 0.614
tll
M06558_2.00
Drosophila melanogaster
WAAAGTCAAM

KTTGACTTTW
B1H
Mathelier et al.(2014)
MA0459.1
0.765 0.614
tll
M06424_2.00
Drosophila melanogaster
AAAGTYA

TRACTTT
B1H
Zhu et al.(2011)
tll_FlyReg_FBgn0003720
0.765 0.614
tll
M06425_2.00
Drosophila melanogaster
WAAAGTCAAM

KTTGACTTTW
B1H
Zhu et al.(2011)
tll_NAR_FBgn0003720
0.765 0.614
tll
M09688_2.00
Drosophila melanogaster
MAAAGTCAAH

DTTGACTTTK
Misc
Kulakovskiy et al.(2009)
tll
0.765 0.614
tll
M11190_2.00
Drosophila melanogaster Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$TLL_Q6
0.765 0.614
Rxrg
M02400_2.00
Mus musculus
VRGGTCAN

NTGACCYB
PBM
Weirauch et al.(2014)
pTH2880
0.757 0.586
RXRG
M03375_2.00
Homo sapiens
RRGGTCAAAGGTCA

TGACCTTTGACCYY
SELEX
Jolma et al.(2013)
RXRG_1
0.757 0.586
RXRG
M03376_2.00
Homo sapiens
RRGGTCATGACCYY

RRGGTCATGACCYY
SELEX
Jolma et al.(2013)
RXRG_2
0.757 0.586
RXRG
M03377_2.00
Homo sapiens
GRGGTCAAAGGTCA

TGACCTTTGACCYC
SELEX
Jolma et al.(2013)
RXRG_3
0.757 0.586
RXRG
M03378_2.00
Homo sapiens
NRGGTCATGACCYC

GRGGTCATGACCYN
SELEX
Jolma et al.(2013)
RXRG_4
0.757 0.586
RXRG
M02746_2.00
Homo sapiens
GGTCAAAGGTCA

TGACCTTTGACC
SELEX
Jolma et al.(2010)
RXRG_dimer
0.757 0.586
RXRG
M05615_2.00
Homo sapiens
VRGGTCAAAGGTCAN

NTGACCTTTGACCYB
SELEX
Yin et al.(2017)
RXRG_FL_HT-SELEX_1
0.757 0.586
RXRG
M05616_2.00
Homo sapiens
RRGGTCAYGACCYY

RRGGTCRTGACCYY
SELEX
Yin et al.(2017)
RXRG_FL_HT-SELEX_2
0.757 0.586
RXRG
M05879_2.00
Homo sapiens
RGGTBAARGGTBRND

HNYVACCYTTVACCY
SMiLE-seq
Isakova et al.(2017)
RXRg
0.757 0.586
RXRG
M09280_2.00
Homo sapiens
NGTCAAAGGTCAH

DTGACCTTTGACN
Misc
Kulakovskiy et al.(2013)
RXRG_HUMAN.H11MO.0.B
0.757 0.586
Rxrg
M09305_2.00
Mus musculus
VDDVDNSVNRAGKTCAAGGYCA

TGRCCTTGAMCTYNBSNHBHHB
Misc
Kulakovskiy et al.(2013)
RXRG_MOUSE.H11MO.0.B
0.757 0.586
RXRG
M05617_2.00
Homo sapiens
DRGGTBAARGGTBRN

NYVACCYTTVACCYH
SELEX
Yin et al.(2017)
RXRG_FL_Methyl-HT-SELEX_1
0.757 0.586
RXRG
M05618_2.00
Homo sapiens
VRGGTCAYGACCYB

VRGGTCRTGACCYB
SELEX
Yin et al.(2017)
RXRG_FL_Methyl-HT-SELEX_2
0.757 0.586
NR2E1
M02394_2.00
Homo sapiens
NGAGGTCARN

NYTGACCTCN
PBM
Weirauch et al.(2014)
pTH6281
0.756 0.571
Nr2e1
M00814_2.00
Mus musculus
NNNGTYRNNN

NNNYRACNNN
PBM
Weirauch et al.(2013)
pTH2936
0.756 0.571
A1YGC6_PANPA
M02421_2.00
Pan paniscus
NNGTCANNN

NNNTGACNN
PBM
Weirauch et al.(2014)
pTH5561
0.756 0.571
NR2E1
M03364_2.00
Homo sapiens
WDAAGTCAA

TTGACTTHW
SELEX
Jolma et al.(2013)
NR2E1_1
0.756 0.571
NR2E1
M03365_2.00
Homo sapiens
RARTCAWDAAGTCA

TGACTTHWTGAYTY
SELEX
Jolma et al.(2013)
NR2E1_2
0.756 0.571
Nr2e1
M03427_2.00
Mus musculus
WDAAGTCAW

WTGACTTHW
SELEX
Jolma et al.(2013)
Nr2e1_1
0.756 0.571
Nr2e1
M03428_2.00
Mus musculus
RRGTCAWDAAGTCA

TGACTTHWTGACYY
SELEX
Jolma et al.(2013)
Nr2e1_2
0.756 0.571
NR2E1
M05585_2.00
Homo sapiens
NNAAGTCAN

NTGACTTNN
SELEX
Yin et al.(2017)
NR2E1_FL_HT-SELEX
0.756 0.571
NR2E1
M05586_2.00
Homo sapiens
NDAAGTCAN

NTGACTTHN
SELEX
Yin et al.(2017)
NR2E1_FL_Methyl-HT-SELEX
0.756 0.571
usp
M03934_2.00
Drosophila melanogaster
ARRGGTCAAAGGTCA

TGACCTTTGACCYYT
SELEX
Nitta et al.(2015)
usp_1
0.755 0.600
usp
M06426_2.00
Drosophila melanogaster
HRRGGTCAH

DTGACCYYD
B1H
Zhu et al.(2011)
usp_SANGER_5_FBgn0003964
0.755 0.600
usp
M02709_2.00
Drosophila melanogaster
GGGGTCACSN

NSGTGACCCC
SELEX
Mathelier et al.(2014)
MA0016.1
0.755 0.600
usp
M09689_2.00
Drosophila melanogaster
KRGGTCACG

CGTGACCYM
Misc
Kulakovskiy et al.(2009)
usp
0.755 0.600
usp
M11191_2.00
Drosophila melanogaster
GRGGTCAYS

SRTGACCYC
Transfac
Matys et al.(2006)
I$CF1_01
0.755 0.600
usp
M11192_2.00
Drosophila melanogaster
GGGGTCAYS

SRTGACCCC
Transfac
Matys et al.(2006)
I$CF1_02
0.755 0.600
Rxrb
M02402_2.00
Mus musculus
VRGGTCAH

DTGACCYB
PBM
Weirauch et al.(2014)
pTH2861
0.752 0.629
RXRB
M03415_2.00
Homo sapiens
RRGGTCAAAGGTCA

TGACCTTTGACCYY
SELEX
Jolma et al.(2013)
RXRB_1
0.752 0.629
Rxrb
M03435_2.00
Mus musculus
GRGGTCAAAGGTCA

TGACCTTTGACCYC
SELEX
Jolma et al.(2013)
Rxrb_1
0.752 0.629
RXRB
M05681_2.00
Homo sapiens
RRGGTCAAAGGTCAN

NTGACCTTTGACCYY
SELEX
Yin et al.(2017)
RXRB_eDBD_HT-SELEX_1
0.752 0.629
RXRB
M05682_2.00
Homo sapiens
RRGGTCAYGACCYY

RRGGTCRTGACCYY
SELEX
Yin et al.(2017)
RXRB_eDBD_HT-SELEX_2
0.752 0.629
RXRB
M09297_2.00
Homo sapiens
DSAGGTCASD

HSTGACCTSH
Misc
Kulakovskiy et al.(2013)
RXRB_HUMAN.H11MO.0.C
0.752 0.629
Rxrb
M09330_2.00
Mus musculus
DSAGGTCASD

HSTGACCTSH
Misc
Kulakovskiy et al.(2013)
RXRB_MOUSE.H11MO.0.C
0.752 0.629
RXRB
M05683_2.00
Homo sapiens
RRGGTCAAAGGTCRN

NYGACCTTTGACCYY
SELEX
Yin et al.(2017)
RXRB_eDBD_Methyl-HT-SELEX_1
0.752 0.629
RXRB
M05684_2.00
Homo sapiens
RRGGTCRYGACCYY

RRGGTCRYGACCYY
SELEX
Yin et al.(2017)
RXRB_eDBD_Methyl-HT-SELEX_2
0.752 0.629
Q969A9_BOMMO
M02410_2.00
Bombyx mori
VRGGTCDN

NHGACCYB
PBM
Weirauch et al.(2014)
pTH5516
0.748 0.529
Rxra
M00181_2.00
Mus musculus
NRRGGTCANN

NNTGACCYYN
PBM
Badis et al.(2009)
Rxra_1035
0.747 0.571
RXRA
M03408_2.00
Homo sapiens
RRGGTCAAAGGTCA

TGACCTTTGACCYY
SELEX
Jolma et al.(2013)
RXRA_1
0.747 0.571
RXRA
M03409_2.00
Homo sapiens
RRGGTCATGACCYY

RRGGTCATGACCYY
SELEX
Jolma et al.(2013)
RXRA_2
0.747 0.571
RXRA
M03410_2.00
Homo sapiens
RRGGTCAAAGGTCA

TGACCTTTGACCYY
SELEX
Jolma et al.(2013)
RXRA_3
0.747 0.571
RXRA
M03411_2.00
Homo sapiens
RRGGTCATGACCYY

RRGGTCATGACCYY
SELEX
Jolma et al.(2013)
RXRA_4
0.747 0.571
Rxra
M03421_2.00
Mus musculus
RRGGTCAAAGGTCA

TGACCTTTGACCYY
SELEX
Jolma et al.(2013)
Rxra_1
0.747 0.571
Rxra
M03422_2.00
Mus musculus
RGGTCATGACCY

RGGTCATGACCY
SELEX
Jolma et al.(2013)
Rxra_2
0.747 0.571
RXRA
M05671_2.00
Homo sapiens
RRGGTCAAAGGTCAN

NTGACCTTTGACCYY
SELEX
Yin et al.(2017)
RXRA_eDBD_HT-SELEX
0.747 0.571
RXRA
M05882_2.00
Homo sapiens
VRGKTBAAAGGTYRH

DYRACCTTTVAMCYB
SMiLE-seq
Isakova et al.(2017)
RXRa
0.747 0.571
RXRA
M07993_2.00
Homo sapiens
NRRGGTCA

TGACCYYN
ChIP-seq
Gerstein et al.(2012)
H1-hESC_RXRA_HudsonAlpha
0.747 0.571
RXRA
M07994_2.00
Homo sapiens
DDNNMRRGGTCANDN

NHNTGACCYYKNNHH
ChIP-seq
Gerstein et al.(2012)
HepG2_RXRA_HudsonAlpha
0.747 0.571
RXRA
M09294_2.00
Homo sapiens
VDDDNDNNVRRRGGKCAVDV

BHBTGMCCYYYBNNHNHHHB
Misc
Kulakovskiy et al.(2013)
RXRA_HUMAN.H11MO.0.A
0.747 0.571
Rxra
M09306_2.00
Mus musculus
DDVNNNNNRAGKTCAAGGYCA

TGRCCTTGAMCTYNNNNNBHH
Misc
Kulakovskiy et al.(2013)
RXRA_MOUSE.H11MO.0.A
0.747 0.571
RXRA
M11182_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RXRA_07
0.747 0.571
RXRA
M05672_2.00
Homo sapiens
RRGGTCAAAGGTCAH

DTGACCTTTGACCYY
SELEX
Yin et al.(2017)
RXRA_eDBD_Methyl-HT-SELEX
0.747 0.571
O77476_BRUPA
M02422_2.00
Brugia pahangi
NRGGTCAN

NTGACCYN
PBM
Weirauch et al.(2014)
pTH6019
0.747 0.600
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000010456 Nuclear receptor 64 133

Links

Other Nuclear receptor family TFs
Other Cavia porcellus TFs

1144 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29032.m000021 Ricinus communis 29032.m000021 I
29813.m001479 Ricinus communis 29813.m001479 I
30169.m006343 Ricinus communis 30169.m006343 I
AC198937.4_FG005 Zea mays AC198937.4_FG005 I
AMTR_s00032p00126420 Amborella trichopoda AMTR_s00032p00126420 I
anac042 Arabidopsis lyrata fgenesh2_kg.4__2460__AT2G43000.1 I
anac042 Vitis vinifera VIT_12s0028g00860 I
anac094 Arabidopsis lyrata Al_scaffold_0007_3733 I
ANAC094 Arabidopsis thaliana AT5G39820 D
anac094 Vitis vinifera VIT_14s0108g00860 I
Aquca_002_00586 Aquilegia coerulea Aquca_002_00586 I
Aquca_006_00295 Aquilegia coerulea Aquca_006_00295 I
Aquca_026_00367 Aquilegia coerulea Aquca_026_00367 I
BGIOSGA009044 Oryza indica BGIOSGA009044 I
BGIOSGA028728 Oryza indica BGIOSGA028728 I
Bo3g036290 Brassica oleracea Bo3g036290 I
Bo4g018490 Brassica oleracea Bo4g018490 I
Bo4g192870 Brassica oleracea Bo4g192870 I
Bo5g045190 Brassica oleracea Bo5g045190 I
Bo6g064260 Brassica oleracea Bo6g064260 I
Bo6g109250 Brassica oleracea Bo6g109250 I
Bo8g076410 Brassica oleracea Bo8g076410 I
Bostr.10058s0013 Boechera stricta Bostr.10058s0013 I
Bostr.12659s0312 Boechera stricta Bostr.12659s0312 I
Bostr.25993s0479 Boechera stricta Bostr.25993s0479 I
Bra000282 Brassica rapa Bra000282 I
Bra004403 Brassica rapa Bra004403 I
Bra004736 Brassica rapa Bra004736 I
Bra016294 Brassica rapa Bra016294 I
Bra024677 Brassica rapa Bra024677 I
Bra028441 Brassica rapa Bra028441 I
Bra037743 Brassica rapa Bra037743 I
BRADI3G37067 Brachypodium distachyon BRADI3G37067 I
BRADI3G59380 Brachypodium distachyon BRADI3G59380 I
BRADI4G30177 Brachypodium distachyon BRADI4G30177 I
Cagra.0202s0012 Capsella grandiflora Cagra.0202s0012 I
Cagra.1150s0013 Capsella grandiflora Cagra.1150s0013 I
Cagra.5905s0003 Capsella grandiflora Cagra.5905s0003 I
Cagra.8367s0003 Capsella grandiflora Cagra.8367s0003 I
Carubv10006906m.g Capsella rubella Carubv10006906m.g I
Carubv10011253m.g Capsella rubella Carubv10011253m.g I
Carubv10021514m.g Capsella rubella Carubv10021514m.g I
Carubv10023730m.g Capsella rubella Carubv10023730m.g I
cassava20477.m1 Manihot esculenta cassava20477.m1 I
cassava21730.m1 Manihot esculenta cassava21730.m1 I
cassava34069.m1 Manihot esculenta cassava34069.m1 I
cassava38350.m1 Manihot esculenta cassava38350.m1 I
cassava39074.m1 Manihot esculenta cassava39074.m1 I
cassava45330.m1 Manihot esculenta cassava45330.m1 I
Ca_15236 Cicer arietinum Ca_15236 I
Ca_18749 Cicer arietinum Ca_18749 I
Ca_26322 Cicer arietinum Ca_26322 I
chr2.LjT04L10.100.nc Lotus japonicus chr2.LjT04L10.100.nc I
chr3.CM0176.150.nc Lotus japonicus chr3.CM0176.150.nc I
Ciclev10005465m.g Citrus clementina Ciclev10005465m.g I
Ciclev10006695m.g Citrus clementina Ciclev10006695m.g I
Ciclev10011891m.g Citrus clementina Ciclev10011891m.g I
Ciclev10031623m.g Citrus clementina Ciclev10031623m.g I
Ciclev10032203m.g Citrus clementina Ciclev10032203m.g I
Cla003401 Citrullus lanatus Cla003401 I
Cla005599 Citrullus lanatus Cla005599 I
Cla010347 Citrullus lanatus Cla010347 I
Cla013684 Citrullus lanatus Cla013684 I
Cla023594 Citrullus lanatus Cla023594 I
CM1835.10.nc Lotus japonicus CM1835.10.nc I
Cucsa.118320 Cucumis sativus Cucsa.118320 I
Cucsa.265620 Cucumis sativus Cucsa.265620 I
Cucsa.285120 Cucumis sativus Cucsa.285120 I
Eucgr.F01463 Eucalyptus grandis Eucgr.F01463 I
Eucgr.G02506 Eucalyptus grandis Eucgr.G02506 I
Eucgr.I01940 Eucalyptus grandis Eucgr.I01940 I
Eucgr.K01228 Eucalyptus grandis Eucgr.K01228 I
evm.TU.supercontig_128.20 Carica papaya evm.TU.supercontig_128.20 I
F775_01324 Aegilops tauschii F775_01324 I
F775_04018 Aegilops tauschii F775_04018 I
F775_22220 Aegilops tauschii F775_22220 I
F775_23219 Aegilops tauschii F775_23219 I
FEZ Arabidopsis thaliana AT1G26870 I
FEZ Arabidopsis lyrata fgenesh1_pg.C_scaffold_1002274 I
gene03833-v1.0-hybrid Fragaria vesca gene03833-v1.0-hybrid I
GLYMA01G05680 Glycine max GLYMA01G05680 I
GLYMA02G11900 Glycine max GLYMA02G11900 I
GLYMA02G45371 Glycine max GLYMA02G45371 I
GLYMA08G41260 Glycine max GLYMA08G41260 I
GLYMA08G41995 Glycine max GLYMA08G41995 I
GLYMA13G05350 Glycine max GLYMA13G05350 I
GLYMA14G03441 Glycine max GLYMA14G03441 I
GLYMA15G40950 Glycine max GLYMA15G40950 I
GLYMA18G13574 Glycine max GLYMA18G13574 I
GLYMA18G15020 Glycine max GLYMA18G15020 I
GLYMA19G02580 Glycine max GLYMA19G02580 I
Gorai.001G091900 Gossypium raimondii Gorai.001G091900 I
Gorai.002G036700 Gossypium raimondii Gorai.002G036700 I
Gorai.004G270300 Gossypium raimondii Gorai.004G270300 I
Gorai.004G270400 Gossypium raimondii Gorai.004G270400 I
Gorai.005G141200 Gossypium raimondii Gorai.005G141200 I
Gorai.006G017700 Gossypium raimondii Gorai.006G017700 I
Gorai.009G357700 Gossypium raimondii Gorai.009G357700 I
Gorai.012G054800 Gossypium raimondii Gorai.012G054800 I
Gorai.013G085000 Gossypium raimondii Gorai.013G085000 I
GRMZM2G100593 Zea mays GRMZM2G100593 I
GRMZM2G112548 Zea mays GRMZM2G112548 I
GRMZM2G152543 Zea mays GRMZM2G152543 I
GRMZM2G159094 Zea mays GRMZM2G159094 I
GSMUA_Achr10G08120_001 Musa acuminata GSMUA_Achr10G08120_001 I
GSMUA_Achr5G02170_001 Musa acuminata GSMUA_Achr5G02170_001 I
GSMUA_Achr6G02680_001 Musa acuminata GSMUA_Achr6G02680_001 I
GSMUA_Achr6G31580_001 Musa acuminata GSMUA_Achr6G31580_001 I
GSMUA_Achr7G00860_001 Musa acuminata GSMUA_Achr7G00860_001 I
JUB1 Arabidopsis thaliana AT2G43000 D
LjT46I09.50.nd Lotus japonicus LjT46I09.50.nd I
LPERR02G26510 Leersia perrieri LPERR02G26510 I
LPERR03G30390 Leersia perrieri LPERR03G30390 I
LPERR08G13170 Leersia perrieri LPERR08G13170 I
Lus10007263.g Linum usitatissimum Lus10007263.g I
Lus10015367.g Linum usitatissimum Lus10015367.g I
Lus10030478.g Linum usitatissimum Lus10030478.g I
Lus10031189.g Linum usitatissimum Lus10031189.g I
Lus10031767.g Linum usitatissimum Lus10031767.g I
Lus10036749.g Linum usitatissimum Lus10036749.g I
Lus10037178.g Linum usitatissimum Lus10037178.g I
MDP0000186765 Malus domestica MDP0000186765 I
MDP0000241821 Malus domestica MDP0000241821 I
mgf019629m Mimulus guttatus mgf019629m N
mgf023960m Mimulus guttatus mgf023960m I
mgf025649m Mimulus guttatus mgf025649m I
mgf026196m Mimulus guttatus mgf026196m I
MLOC_60079 Hordeum vulgare MLOC_60079 I
MTR_5g040420 Medicago truncatula MTR_5g040420 I
MTR_5g090970 Medicago truncatula MTR_5g090970 I
MTR_6g011860 Medicago truncatula MTR_6g011860 I
MTR_8g467490 Medicago truncatula MTR_8g467490 I
OB02G39340 Oryza brachyantha OB02G39340 I
OB08G23420 Oryza brachyantha OB08G23420 I
OBART02G32360 Oryza barthii OBART02G32360 I
OBART08G15880 Oryza barthii OBART08G15880 I
OGLUM02G33000 Oryza glumaepatula OGLUM02G33000 I
OGLUM03G35790 Oryza glumaepatula OGLUM03G35790 I
OGLUM08G16650 Oryza glumaepatula OGLUM08G16650 I
OLONG_016322 Oryza longistaminata OLONG_016322 I
OMERI02G31030 Oryza meridionalis OMERI02G31030 I
OMERI08G13180 Oryza meridionalis OMERI08G13180 I
ONIVA06G04660 Oryza nivara ONIVA06G04660 I
ONIVA08G17120 Oryza nivara ONIVA08G17120 I
OPUNC02G29910 Oryza punctata OPUNC02G29910 I
OPUNC08G13940 Oryza punctata OPUNC08G13940 I
orange1.1g015827m.g Citrus sinensis orange1.1g015827m.g I
orange1.1g021785m.g Citrus sinensis orange1.1g021785m.g I
orange1.1g046948m.g Citrus sinensis orange1.1g046948m.g I
orange1.1g047852m.g Citrus sinensis orange1.1g047852m.g I
ORGLA02G0278900 Oryza glaberrima ORGLA02G0278900 I
ORUFI02G34050 Oryza rufipogon ORUFI02G34050 I
ORUFI08G17800 Oryza rufipogon ORUFI08G17800 I
OS02G0745250 Oryza sativa OS02G0745250 I
OS08G0436700 Oryza sativa OS08G0436700 I
Pavir.Aa00706 Panicum virgatum Pavir.Aa00706 I
Pavir.Ab02998 Panicum virgatum Pavir.Ab02998 I
Pavir.Bb02181 Panicum virgatum Pavir.Bb02181 I
Pavir.Fa00893 Panicum virgatum Pavir.Fa00893 I
Pavir.J03639 Panicum virgatum Pavir.J03639 I
Pavir.J08304 Panicum virgatum Pavir.J08304 I
Pavir.J26531 Panicum virgatum Pavir.J26531 I
PDK_20s1311871g001 Phoenix dactylifera PDK_20s1311871g001 I
PGSC0003DMG400001323 Solanum tuberosum PGSC0003DMG400001323 I
PGSC0003DMG400021119 Solanum tuberosum PGSC0003DMG400021119 I
PGSC0003DMG400031266 Solanum tuberosum PGSC0003DMG400031266 I
PGSC0003DMG400039898 Solanum tuberosum PGSC0003DMG400039898 I
PK01104.1 Cannabis sativa PK01104.1 I
PK17295.1 Cannabis sativa PK17295.1 N
PK18158.1 Cannabis sativa PK18158.1 I
Pm006506 Prunus mume Pm006506 I
Pm011037 Prunus mume Pm011037 I
Pm014764 Prunus mume Pm014764 I
Pm015876 Prunus mume Pm015876 I
POPTR_0001s11660 Populus trichocarpa POPTR_0001s11660 I
POPTR_0002s05820 Populus trichocarpa POPTR_0002s05820 I
POPTR_0004s12850 Populus trichocarpa POPTR_0004s12850 I
POPTR_0005s10080 Populus trichocarpa POPTR_0005s10080 I
POPTR_0005s22710 Populus trichocarpa POPTR_0005s22710 I
POPTR_0007s08340 Populus trichocarpa POPTR_0007s08340 I
POPTR_0017s11830 Populus trichocarpa POPTR_0017s11830 I
PRUPE_ppa016710mg Prunus persica PRUPE_ppa016710mg I
PRUPE_ppa022043mg Prunus persica PRUPE_ppa022043mg I
PRUPE_ppa022278mg Prunus persica PRUPE_ppa022278mg I
SapurV1A.0076s0070 Salix purpurea SapurV1A.0076s0070 I
SapurV1A.0085s0430 Salix purpurea SapurV1A.0085s0430 I
SapurV1A.0094s0540 Salix purpurea SapurV1A.0094s0540 I
SapurV1A.0354s0230 Salix purpurea SapurV1A.0354s0230 I
SapurV1A.0552s0060 Salix purpurea SapurV1A.0552s0060 I
SapurV1A.2065s0010 Salix purpurea SapurV1A.2065s0010 I
SapurV1A.2645s0010 Salix purpurea SapurV1A.2645s0010 I
Sb02g024593 Sorghum bicolor Sb02g024593 I
Sb04g028015 Sorghum bicolor Sb04g028015 I
Sb07g021400 Sorghum bicolor Sb07g021400 I
Si015514m.g Setaria italica Si015514m.g I
Si019308m.g Setaria italica Si019308m.g I
Si032144m.g Setaria italica Si032144m.g I
Si036447m.g Setaria italica Si036447m.g I
Solyc02g069960.2 Solanum lycopersicum Solyc02g069960.2 I
Solyc02g087920.2 Solanum lycopersicum Solyc02g087920.2 I
Solyc05g007550.1 Solanum lycopersicum Solyc05g007550.1 I
TCM_001955 Theobroma cacao TCM_001955 I
TCM_018508 Theobroma cacao TCM_018508 I
TCM_032393 Theobroma cacao TCM_032393 I
Thhalv10007709m.g Eutrema salsugineum Thhalv10007709m.g I
Thhalv10017054m.g Eutrema salsugineum Thhalv10017054m.g I
Thhalv10019631m.g Eutrema salsugineum Thhalv10019631m.g I
Thhalv10027860m.g Eutrema salsugineum Thhalv10027860m.g I
Traes_2AS_C73DE621D Triticum aestivum Traes_2AS_C73DE621D I
Traes_2BS_2244C64CC Triticum aestivum Traes_2BS_2244C64CC I
Traes_2BS_3B6ABF5E6 Triticum aestivum Traes_2BS_3B6ABF5E6 I
Traes_2DS_8C3F6A558 Triticum aestivum Traes_2DS_8C3F6A558 I
Traes_2DS_E2F2E9EAF Triticum aestivum Traes_2DS_E2F2E9EAF I
Traes_5AL_F2A49EB8E Triticum aestivum Traes_5AL_F2A49EB8E I
Traes_5AL_F35B9FF8E Triticum aestivum Traes_5AL_F35B9FF8E I
Traes_5BL_2131D2B17 Triticum aestivum Traes_5BL_2131D2B17 I
Traes_5BL_38DFDFE41 Triticum aestivum Traes_5BL_38DFDFE41 I
Traes_5DL_0713E8429 Triticum aestivum Traes_5DL_0713E8429 I
Traes_6AL_0D7866801 Triticum aestivum Traes_6AL_0D7866801 I
Traes_6BL_A169A3ECB Triticum aestivum Traes_6BL_A169A3ECB I
Traes_6DL_DA233B945 Triticum aestivum Traes_6DL_DA233B945 I
TRIUR3_01901 Triticum urartu TRIUR3_01901 I
TRIUR3_04556 Triticum urartu TRIUR3_04556 I
TRIUR3_04557 Triticum urartu TRIUR3_04557 I
TRIUR3_04558 Triticum urartu TRIUR3_04558 N
VIT_01s0026g02360 Vitis vinifera VIT_01s0026g02360 I
VIT_19s0027g00840 Vitis vinifera VIT_19s0027g00840 I
VIT_19s0027g00860 Vitis vinifera VIT_19s0027g00860 I
VIT_19s0027g00870 Vitis vinifera VIT_19s0027g00870 I
VIT_19s0027g00880 Vitis vinifera VIT_19s0027g00880 I
VIT_19s0027g00910 Vitis vinifera VIT_19s0027g00910 I