LCUP004919 (Lucilia cuprina)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 LCUP004919 T307119_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
eg
M03927_2.00 		Drosophila melanogaster
NAAAYTRGAKCA
TGMTCYARTTTN		 SELEX
Nitta et al.(2015)
eg_1 		0.985 0.971
eg
M06415_2.00 		Drosophila melanogaster
RAAANTAGRGCAV
BTGCYCTANTTTY		 B1H
Zhu et al.(2011)
eg_SANGER_5_FBgn0000560 		0.985 0.971
AGAP010438
M02389_2.00 		Anopheles gambiae
NRGDKCRNN
NNYGMHCYN		 PBM
Weirauch et al.(2014)
pTH6429 		0.979 0.871
knrl
M03930_2.00 		Drosophila melanogaster
AWNTRGRKCAN
NTGMYCYANWT		 SELEX
Nitta et al.(2015)
knrl_1 		0.977 0.857
knrl
M03931_2.00 		Drosophila melanogaster
AWBBGTAACR
YGTTACVVWT		 SELEX
Nitta et al.(2015)
knrl_2 		0.977 0.857
knrl
M06422_2.00 		Drosophila melanogaster
AAABTRGRKCA
TGMYCYAVTTT		 B1H
Zhu et al.(2011)
knrl_SANGER_5_FBgn0001323 		0.977 0.857
kni
M06557_2.00 		Drosophila melanogaster
AAWNTAGRGCAV
BTGCYCTANWTT		 B1H
Mathelier et al.(2014)
MA0451.1 		0.971 0.829
kni
M06419_2.00 		Drosophila melanogaster
RAWNKVGNWC
GWNCBMNWTY		 B1H
Zhu et al.(2011)
kni_FlyReg_FBgn0001320 		0.971 0.829
kni
M06420_2.00 		Drosophila melanogaster
AAWNTAGRGCAV
BTGCYCTANWTT		 B1H
Zhu et al.(2011)
kni_NAR_FBgn0001320 		0.971 0.829
kni
M06421_2.00 		Drosophila melanogaster
RWAANTRGRNCA
TGNYCYANTTWY		 B1H
Zhu et al.(2011)
kni_SANGER_5_FBgn0001320 		0.971 0.829
kni
M08225_2.00 		Drosophila melanogaster
YAGNGYTGYC
GRCARCNCTR		 ChIP-seq
Contrino et al.(2012)
Mf24 		0.971 0.829
kni
M09687_2.00 		Drosophila melanogaster
NAAWNKRGADCAV
BTGHTCYMNWTTN		 Misc
Kulakovskiy et al.(2009)
kni 		0.971 0.829
kni
M11189_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$KNI_Q6 		0.971 0.829
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LCUP004919-PA Nuclear receptor 3 85

Links

Other Nuclear receptor family TFs
Other Lucilia cuprina TFs

102 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
anac074 Arabidopsis thaliana AT4G28530 N
anac074 Arabidopsis lyrata fgenesh2_kg.7__1345__AT4G28530.1 N
Aquca_017_00744 Aquilegia coerulea Aquca_017_00744 N
BGIOSGA009257 Oryza indica BGIOSGA009257 N
BGIOSGA016756 Oryza indica BGIOSGA016756 N
Bo1g017380 Brassica oleracea Bo1g017380 N
Bo7g113180 Brassica oleracea Bo7g113180 N
Bo8g054390 Brassica oleracea Bo8g054390 N
Bostr.7867s0694 Boechera stricta Bostr.7867s0694 N
Bra010362 Brassica rapa Bra010362 N
Bra011037 Brassica rapa Bra011037 N
Bra024194 Brassica rapa Bra024194 N
BRADI5G15587 Brachypodium distachyon BRADI5G15587 N
Cagra.1225s0038 Capsella grandiflora Cagra.1225s0038 N
Carubv10005139m.g Capsella rubella Carubv10005139m.g N
cassava41082.m1 Manihot esculenta cassava41082.m1 N
Ca_07743 Cicer arietinum Ca_07743 N
Ciclev10021312m.g Citrus clementina Ciclev10021312m.g N
Eucgr.K03256 Eucalyptus grandis Eucgr.K03256 N
evm.TU.supercontig_165.12 Carica papaya evm.TU.supercontig_165.12 N
F775_08585 Aegilops tauschii F775_08585 N
F775_17109 Aegilops tauschii F775_17109 N
gene08112-v1.0-hybrid Fragaria vesca gene08112-v1.0-hybrid N
GLYMA03G32116 Glycine max GLYMA03G32116 N
GLYMA10G04350 Glycine max GLYMA10G04350 N
GLYMA13G18620 Glycine max GLYMA13G18620 N
GLYMA19G34881 Glycine max GLYMA19G34881 N
Gorai.001G178800 Gossypium raimondii Gorai.001G178800 N
Gorai.001G254300 Gossypium raimondii Gorai.001G254300 N
Gorai.004G221300 Gossypium raimondii Gorai.004G221300 N
Gorai.007G147300 Gossypium raimondii Gorai.007G147300 N
GRMZM2G043813 Zea mays GRMZM2G043813 N
GRMZM2G062009 Zea mays GRMZM2G062009 N
GRMZM2G081930 Zea mays GRMZM2G081930 N
GSMUA_Achr11G00880_001 Musa acuminata GSMUA_Achr11G00880_001 N
GSMUA_Achr11G22760_001 Musa acuminata GSMUA_Achr11G22760_001 N
GSMUA_Achr1G10860_001 Musa acuminata GSMUA_Achr1G10860_001 N
GSMUA_Achr1G20530_001 Musa acuminata GSMUA_Achr1G20530_001 N
GSMUA_Achr5G18670_001 Musa acuminata GSMUA_Achr5G18670_001 N
GSMUA_Achr8G18980_001 Musa acuminata GSMUA_Achr8G18980_001 N
GSMUA_AchrUn_randomG02760_001 Musa acuminata GSMUA_AchrUn_randomG02760_001 N
LPERR02G20100 Leersia perrieri LPERR02G20100 N
Lus10022915.g Linum usitatissimum Lus10022915.g N
Lus10033905.g Linum usitatissimum Lus10033905.g N
MDP0000697030 Malus domestica MDP0000697030 N
mgf009162m Mimulus guttatus mgf009162m N
mgf018312m Mimulus guttatus mgf018312m N
MLOC_12466 Hordeum vulgare MLOC_12466 N
MLOC_5165 Hordeum vulgare MLOC_5165 N
MTR_1g069805 Medicago truncatula MTR_1g069805 N
MTR_7g097090 Medicago truncatula MTR_7g097090 N
OB02G31950 Oryza brachyantha OB02G31950 N
OB02G43380 Oryza brachyantha OB02G43380 N
OB04G25790 Oryza brachyantha OB04G25790 N
OBART02G24560 Oryza barthii OBART02G24560 N
OBART02G36830 Oryza barthii OBART02G36830 N
OBART04G18700 Oryza barthii OBART04G18700 N
OGLUM02G24950 Oryza glumaepatula OGLUM02G24950 N
OGLUM02G38020 Oryza glumaepatula OGLUM02G38020 I
OGLUM04G18750 Oryza glumaepatula OGLUM04G18750 N
OLONG_011232 Oryza longistaminata OLONG_011232 N
OMERI02G24100 Oryza meridionalis OMERI02G24100 N
OMERI02G34720 Oryza meridionalis OMERI02G34720 N
ONIVA02G26880 Oryza nivara ONIVA02G26880 N
ONIVA02G39640 Oryza nivara ONIVA02G39640 N
ONIVA04G01950 Oryza nivara ONIVA04G01950 N
OPUNC02G33860 Oryza punctata OPUNC02G33860 N
OPUNC04G16450 Oryza punctata OPUNC04G16450 N
ORGLA02G0320500 Oryza glaberrima ORGLA02G0320500 N
ORGLA04G0158100 Oryza glaberrima ORGLA04G0158100 N
ORUFI02G25930 Oryza rufipogon ORUFI02G25930 N
ORUFI02G38340 Oryza rufipogon ORUFI02G38340 N
ORUFI04G20200 Oryza rufipogon ORUFI04G20200 N
OS02G0810900 Oryza sativa OS02G0810900 N
OS04G0515900 Oryza sativa OS04G0515900 N
Pavir.Aa01668 Panicum virgatum Pavir.Aa01668 N
Pavir.Ab02337 Panicum virgatum Pavir.Ab02337 N
Pavir.Ga01251 Panicum virgatum Pavir.Ga01251 N
Pavir.Gb00655 Panicum virgatum Pavir.Gb00655 N
Pavir.Ib03261 Panicum virgatum Pavir.Ib03261 N
Pavir.J11268 Panicum virgatum Pavir.J11268 N
PDK_20s1301681g003 Phoenix dactylifera PDK_20s1301681g003 N
PDK_20s1648061g001 Phoenix dactylifera PDK_20s1648061g001 N
PGSC0003DMG400010294 Solanum tuberosum PGSC0003DMG400010294 N
PGSC0003DMG400020147 Solanum tuberosum PGSC0003DMG400020147 N
PK19051.1 Cannabis sativa PK19051.1 N
Pm020580 Prunus mume Pm020580 N
PRUPE_ppa009628mg Prunus persica PRUPE_ppa009628mg N
SapurV1A.0006s0680 Salix purpurea SapurV1A.0006s0680 N
SapurV1A.0233s0110 Salix purpurea SapurV1A.0233s0110 N
Sb04g026440 Sorghum bicolor Sb04g026440 N
Si010799m.g Setaria italica Si010799m.g N
Si018001m.g Setaria italica Si018001m.g N
Si036835m.g Setaria italica Si036835m.g N
Solyc06g008360.2 Solanum lycopersicum Solyc06g008360.2 N
Solyc09g025310.2 Solanum lycopersicum Solyc09g025310.2 N
TCM_003998 Theobroma cacao TCM_003998 N
Thhalv10025606m.g Eutrema salsugineum Thhalv10025606m.g N
Traes_2BL_D718E27A9 Triticum aestivum Traes_2BL_D718E27A9 N
Traes_6AL_B92597EA9 Triticum aestivum Traes_6AL_B92597EA9 N
Traes_6BL_99F790D57 Triticum aestivum Traes_6BL_99F790D57 N
Traes_6DL_1ABE78799 Triticum aestivum Traes_6DL_1ABE78799 N
Traes_6DL_8A1342D56 Triticum aestivum Traes_6DL_8A1342D56 N
TRIUR3_32754 Triticum urartu TRIUR3_32754 N
TRIUR3_33179 Triticum urartu TRIUR3_33179 N