ENSAPLG00000013409 (Anas platyrhynchos)
Rel

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00554 (RHD_DNA_bind) IPR011539 ENSAPLG00000013409 T317036_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Nfkb2
M09356_2.00 		Mus musculus
GGGRHTTYCCC
GGGRAADYCCC		 Misc
Kulakovskiy et al.(2013)
NFKB2_MOUSE.H11MO.0.C 		0.805 0.805
NFKB2
M03446_2.00 		Homo sapiens
NGGGGAWTCCCCB
VGGGGAWTCCCCN		 SELEX
Jolma et al.(2013)
NFKB2_1 		0.793 0.793
NFKB2
M05699_2.00 		Homo sapiens
HGGKRNWTCCCCN
NGGGGAWNYMCCD		 SELEX
Yin et al.(2017)
NFKB2_eDBD_HT-SELEX 		0.793 0.793
NFKB2
M09344_2.00 		Homo sapiens
GGGRHTTYCCC
GGGRAADYCCC		 Misc
Kulakovskiy et al.(2013)
NFKB2_HUMAN.H11MO.0.B 		0.793 0.793
NFKB2
M05700_2.00 		Homo sapiens
HGGKRNWTYCCCN
NGGGRAWNYMCCD		 SELEX
Yin et al.(2017)
NFKB2_eDBD_Methyl-HT-SELEX 		0.793 0.793
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSAPLP00000013281 Rel 35 216

Links

Other Rel family TFs
Other Anas platyrhynchos TFs

54 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.25463s0219 Boechera stricta Bostr.25463s0219 I
Cagra.3839s0004 Capsella grandiflora Cagra.3839s0004 I
Carubv10001458m.g Capsella rubella Carubv10001458m.g I
cassava42820.valid.m1 Manihot esculenta cassava42820.valid.m1 I
chr4.CM0025.230.nd Lotus japonicus chr4.CM0025.230.nd I
estExt_fgenesh1_pg.C_840061 Physcomitrella patens estExt_fgenesh1_pg.C_840061 N
Eucgr.E00850 Eucalyptus grandis Eucgr.E00850 I
fgenesh1_pg.scaffold_195000041 Physcomitrella patens fgenesh1_pg.scaffold_195000041 N
fgenesh1_pg.scaffold_236000008 Physcomitrella patens fgenesh1_pg.scaffold_236000008 N
Gorai.004G134600 Gossypium raimondii Gorai.004G134600 I
GSMUA_Achr4G15640_001 Musa acuminata GSMUA_Achr4G15640_001 I
Pavir.Ca02643 Panicum virgatum Pavir.Ca02643 I
POPTR_0001s10490 Populus trichocarpa POPTR_0001s10490 I
POPTR_0003s13840 Populus trichocarpa POPTR_0003s13840 I
SapurV1A.0237s0250 Salix purpurea SapurV1A.0237s0250 I
TCM_016426 Theobroma cacao TCM_016426 I
Thhalv10028794m.g Eutrema salsugineum Thhalv10028794m.g I
WRKY41 Arabidopsis thaliana AT4G11070 I
WRKY41 Arabidopsis lyrata fgenesh2_kg.6__3080__AT4G11070.1 I