cassava45931.m1 (Manihot esculenta)
S1FA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04689 (S1FA) IPR006779 cassava45931.m1 T321468_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
S1FA3
M07252_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
AT3G09735_col_a 		0.712 0.712
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava45931.m1 S1FA 6 71

Links

Other S1FA family TFs
Other Manihot esculenta TFs

86 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA015142 Oryza indica BGIOSGA015142 N 0.000
BGIOSGA015143 Oryza indica BGIOSGA015143 N 0.712
BGIOSGA015145 Oryza indica BGIOSGA015145 N 0.000
BRADI5G09140 Brachypodium distachyon BRADI5G09140 N 0.712
Eucgr.A01168 Eucalyptus grandis Eucgr.A01168 I 0.818
GRMZM2G056929 Zea mays GRMZM2G056929 N 0.732
GRMZM2G147424 Zea mays GRMZM2G147424 N 0.712
LPERR04G08400 Leersia perrieri LPERR04G08400 N 0.727
LPERR04G08410 Leersia perrieri LPERR04G08410 I 0.712
MDP0000559232 Malus domestica MDP0000559232 N 0.000
MLOC_67411 Hordeum vulgare MLOC_67411 N 0.712
OB04G18770 Oryza brachyantha OB04G18770 I 0.727
OB04G18780 Oryza brachyantha OB04G18780 I 0.712
OBART04G11650 Oryza barthii OBART04G11650 N 0.712
OBART04G11660 Oryza barthii OBART04G11660 N 0.000
OGLUM04G11330 Oryza glumaepatula OGLUM04G11330 N 0.712
OGLUM04G11340 Oryza glumaepatula OGLUM04G11340 N 0.000
OMERI04G10270 Oryza meridionalis OMERI04G10270 N 0.000
OMERI04G10280 Oryza meridionalis OMERI04G10280 N 0.000
ONIVA04G09610 Oryza nivara ONIVA04G09610 N 0.712
ONIVA04G09620 Oryza nivara ONIVA04G09620 N 0.000
OPUNC04G09660 Oryza punctata OPUNC04G09660 N 0.000
ORGLA04G0086600 Oryza glaberrima ORGLA04G0086600 N 0.712
ORGLA04G0086800 Oryza glaberrima ORGLA04G0086800 N 0.000
ORUFI04G12840 Oryza rufipogon ORUFI04G12840 N 0.712
ORUFI04G12850 Oryza rufipogon ORUFI04G12850 N 0.000
OS04G0408900 Oryza sativa OS04G0408900 N 0.000
Pavir.Ga01929 Panicum virgatum Pavir.Ga01929 N 0.742
Pavir.Gb01773 Panicum virgatum Pavir.Gb01773 N 0.727
PGSC0003DMG400001772 Solanum tuberosum PGSC0003DMG400001772 I 0.848
PGSC0003DMG400020934 Solanum tuberosum PGSC0003DMG400020934 I 0.879
S1FA1 Arabidopsis thaliana AT3G53370 I 0.742
S1FA2 Oryza sativa OS04G0408700 N 0.712
Sb06g015340 Sorghum bicolor Sb06g015340 N 0.000
Si011030m.g Setaria italica Si011030m.g N 0.727
Traes_2AL_65586C538 Triticum aestivum Traes_2AL_65586C538 N 0.712
Traes_2BL_26A5F9082 Triticum aestivum Traes_2BL_26A5F9082 N 0.712
Traes_2DL_032C7FC8C Triticum aestivum Traes_2DL_032C7FC8C N 0.712
TRIUR3_32840 Triticum urartu TRIUR3_32840 N 0.000