PGSC0003DMG400001772 (Solanum tuberosum)
S1FA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04689 (S1FA) IPR006779 PGSC0003DMG400001772 T321417_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
S1FA3
M07252_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
AT3G09735_col_a 		0.719 0.719
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400004439 S1FA 1 32
PGSC0003DMT400004440 S1FA 4 69
PGSC0003DMT400004441 S1FA 15 80

Links

Other S1FA family TFs
Other Solanum tuberosum TFs

105 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc09g007500.2 Solanum lycopersicum Solyc09g007500.2 I 0.985
Ciclev10013218m.g Citrus clementina Ciclev10013218m.g I 0.909
orange1.1g044991m.g Citrus sinensis orange1.1g044991m.g I 0.909
GLYMA03G33640 Glycine max GLYMA03G33640 I 0.894
PGSC0003DMG400020934 Solanum tuberosum PGSC0003DMG400020934 I 0.894
GLYMA19G36350 Glycine max GLYMA19G36350 I 0.879
PGSC0003DMG401017590 Solanum tuberosum PGSC0003DMG401017590 I 0.879
29805.m001471 Ricinus communis 29805.m001471 I 0.879
evm.TU.supercontig_638.2 Carica papaya evm.TU.supercontig_638.2 I 0.879
POPTR_0006s13230 Populus trichocarpa POPTR_0006s13230 I 0.864
Cucsa.124240 Cucumis sativus Cucsa.124240 I 0.864
mgf000337m Mimulus guttatus mgf000337m I 0.864
Gorai.009G419300 Gossypium raimondii Gorai.009G419300 I 0.864
SapurV1A.0112s0080 Salix purpurea SapurV1A.0112s0080 I 0.864
SapurV1A.0209s0130 Salix purpurea SapurV1A.0209s0130 I 0.864
GLYMA10G05790 Glycine max GLYMA10G05790 I 0.848
Cla018106 Citrullus lanatus Cla018106 I 0.848
Cla018556 Citrullus lanatus Cla018556 I 0.848
cassava45931.m1 Manihot esculenta cassava45931.m1 I 0.848
GSMUA_Achr6G23400_001 Musa acuminata GSMUA_Achr6G23400_001 N 0.833
MTR_7g100905 Medicago truncatula MTR_7g100905 I 0.833
POPTR_0016s08890 Populus trichocarpa POPTR_0016s08890 I 0.833
TCM_022113 Theobroma cacao TCM_022113 I 0.833
VIT_06s0004g03160 Vitis vinifera VIT_06s0004g03160 I 0.833
Ca_12027 Cicer arietinum Ca_12027 I 0.833
Cucsa.307040 Cucumis sativus Cucsa.307040 I 0.833
Aquca_027_00077 Aquilegia coerulea Aquca_027_00077 I 0.833
Gorai.002G249300 Gossypium raimondii Gorai.002G249300 I 0.833
Lus10015073.g Linum usitatissimum Lus10015073.g I 0.833
Lus10023177.g Linum usitatissimum Lus10023177.g I 0.833
GLYMA13G20160 Glycine max GLYMA13G20160 I 0.818
VIT_08s0040g02220 Vitis vinifera VIT_08s0040g02220 I 0.818
Ca_12028 Cicer arietinum Ca_12028 I 0.818
gene09647-v1.0-hybrid Fragaria vesca gene09647-v1.0-hybrid N 0.818
Gorai.006G168100 Gossypium raimondii Gorai.006G168100 I 0.818
PK08477.1 Cannabis sativa PK08477.1 I 0.818
GSMUA_Achr10G13120_001 Musa acuminata GSMUA_Achr10G13120_001 I 0.803
MTR_7g100880 Medicago truncatula MTR_7g100880 I 0.803
MTR_7g100890 Medicago truncatula MTR_7g100890 I 0.803
mgf004062m Mimulus guttatus mgf004062m I 0.803
chr1.CM0033.550.nc Lotus japonicus chr1.CM0033.550.nc I 0.803
scaffold_402348.1 Arabidopsis lyrata scaffold_402348.1 I 0.788
Eucgr.A01168 Eucalyptus grandis Eucgr.A01168 I 0.788
MDP0000276000 Malus domestica MDP0000276000 N 0.788
AMTR_s00052p00202630 Amborella trichopoda AMTR_s00052p00202630 I 0.773
PRUPE_ppa014157mg Prunus persica PRUPE_ppa014157mg N 0.773
Pm002519 Prunus mume Pm002519 N 0.773
Bostr.23794s0377 Boechera stricta Bostr.23794s0377 I 0.773
Cagra.0666s0032 Capsella grandiflora Cagra.0666s0032 I 0.773
Carubv10025429m.g Capsella rubella Carubv10025429m.g I 0.773
Thhalv10017496m.g Eutrema salsugineum Thhalv10017496m.g I 0.773
S1FA3 Arabidopsis thaliana AT3G09735 D 0.758
Bra029784 Brassica rapa Bra029784 I 0.758
Cagra.2515s0064 Capsella grandiflora Cagra.2515s0064 I 0.758
Carubv10015035m.g Capsella rubella Carubv10015035m.g I 0.758
Pavir.Ga01929 Panicum virgatum Pavir.Ga01929 N 0.758
Thhalv10021874m.g Eutrema salsugineum Thhalv10021874m.g I 0.758
Bo5g138130 Brassica oleracea Bo5g138130 I 0.750
OPUNC04G09650 Oryza punctata OPUNC04G09650 I 0.750
S1FA2 Arabidopsis thaliana AT2G37120 I 0.742
S1FA1 Arabidopsis thaliana AT3G53370 I 0.742
BGIOSGA015143 Oryza indica BGIOSGA015143 N 0.742
fgenesh1_pm.C_scaffold_5001425 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001425 I 0.742
LPERR04G08410 Leersia perrieri LPERR04G08410 I 0.742
OB04G18780 Oryza brachyantha OB04G18780 I 0.742
OBART04G11650 Oryza barthii OBART04G11650 N 0.742
OGLUM04G11330 Oryza glumaepatula OGLUM04G11330 N 0.742
ONIVA04G09610 Oryza nivara ONIVA04G09610 N 0.742
ORGLA04G0086600 Oryza glaberrima ORGLA04G0086600 N 0.742
ORUFI04G12840 Oryza rufipogon ORUFI04G12840 N 0.742
S1FA2 Oryza sativa OS04G0408700 N 0.742
fgenesh2_kg.3__997__AT3G09735.1 Arabidopsis lyrata fgenesh2_kg.3__997__AT3G09735.1 I 0.734
GRMZM2G056929 Zea mays GRMZM2G056929 N 0.732
BGIOSGA015142 Oryza indica BGIOSGA015142 N 0.727
BGIOSGA015145 Oryza indica BGIOSGA015145 N 0.727
Bo1g144300 Brassica oleracea Bo1g144300 I 0.727
Bra034084 Brassica rapa Bra034084 I 0.727
BRADI5G09140 Brachypodium distachyon BRADI5G09140 N 0.727
GSMUA_Achr3G17900_001 Musa acuminata GSMUA_Achr3G17900_001 N 0.727
MLOC_67411 Hordeum vulgare MLOC_67411 N 0.727
OB04G18770 Oryza brachyantha OB04G18770 I 0.727
OBART04G11660 Oryza barthii OBART04G11660 N 0.727
OGLUM04G11340 Oryza glumaepatula OGLUM04G11340 N 0.727
OMERI04G10270 Oryza meridionalis OMERI04G10270 N 0.727
OMERI04G10280 Oryza meridionalis OMERI04G10280 N 0.727
ONIVA04G09620 Oryza nivara ONIVA04G09620 N 0.727
OPUNC04G09660 Oryza punctata OPUNC04G09660 N 0.727
ORGLA04G0086800 Oryza glaberrima ORGLA04G0086800 N 0.727
ORUFI04G12850 Oryza rufipogon ORUFI04G12850 N 0.727
OS04G0408900 Oryza sativa OS04G0408900 N 0.727
Si011030m.g Setaria italica Si011030m.g N 0.727
Traes_2AL_65586C538 Triticum aestivum Traes_2AL_65586C538 N 0.727
Traes_2BL_26A5F9082 Triticum aestivum Traes_2BL_26A5F9082 N 0.727
Traes_2DL_032C7FC8C Triticum aestivum Traes_2DL_032C7FC8C N 0.727
Bostr.22252s0094 Boechera stricta Bostr.22252s0094 I 0.727
Cagra.0612s0062 Capsella grandiflora Cagra.0612s0062 I 0.727
Carubv10018341m.g Capsella rubella Carubv10018341m.g I 0.727
Pavir.Gb01773 Panicum virgatum Pavir.Gb01773 N 0.727
Thhalv10010878m.g Eutrema salsugineum Thhalv10010878m.g I 0.727
Bo3g061880 Brassica oleracea Bo3g061880 I 0.712
GRMZM2G147424 Zea mays GRMZM2G147424 N 0.712
LPERR04G08400 Leersia perrieri LPERR04G08400 N 0.712
Sb06g015340 Sorghum bicolor Sb06g015340 N 0.712
MDP0000559232 Malus domestica MDP0000559232 N 0.712