scaffold_402348.1 (Arabidopsis lyrata)
S1FA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04689 (S1FA) IPR006779 scaffold_402348.1 T321432_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
S1FA3
M07252_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
AT3G09735_col_a 		0.758 0.758
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_402348.1 S1FA 11 76

Links

Other S1FA family TFs
Other Arabidopsis lyrata TFs

90 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0666s0032 Capsella grandiflora Cagra.0666s0032 I 0.970
Carubv10025429m.g Capsella rubella Carubv10025429m.g I 0.970
Bostr.23794s0377 Boechera stricta Bostr.23794s0377 I 0.955
S1FA2 Arabidopsis thaliana AT2G37120 I 0.939
Thhalv10017496m.g Eutrema salsugineum Thhalv10017496m.g I 0.939
S1FA1 Arabidopsis thaliana AT3G53370 I 0.894
fgenesh1_pm.C_scaffold_5001425 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001425 I 0.894
Thhalv10010878m.g Eutrema salsugineum Thhalv10010878m.g I 0.894
Bo6g067310 Brassica oleracea Bo6g067310 I 0.879
Bra003132 Brassica rapa Bra003132 I 0.879
Bostr.11793s0058 Boechera stricta Bostr.11793s0058 I 0.879
Cagra.0612s0062 Capsella grandiflora Cagra.0612s0062 I 0.864
Carubv10018341m.g Capsella rubella Carubv10018341m.g I 0.864
Bo00703s130 Brassica oleracea Bo00703s130 I 0.833
Bo00703s150 Brassica oleracea Bo00703s150 I 0.833
Bra039779 Brassica rapa Bra039779 I 0.833
GSMUA_Achr10G13120_001 Musa acuminata GSMUA_Achr10G13120_001 I 0.818
Bra006994 Brassica rapa Bra006994 I 0.803
mgf000337m Mimulus guttatus mgf000337m I 0.803
Thhalv10021874m.g Eutrema salsugineum Thhalv10021874m.g I 0.803
Bo1g144300 Brassica oleracea Bo1g144300 I 0.788
Bra029784 Brassica rapa Bra029784 I 0.788
Bra034084 Brassica rapa Bra034084 I 0.788
PGSC0003DMG400001772 Solanum tuberosum PGSC0003DMG400001772 I 0.788
mgf004062m Mimulus guttatus mgf004062m I 0.788
Bostr.22252s0094 Boechera stricta Bostr.22252s0094 I 0.788
Cagra.2515s0064 Capsella grandiflora Cagra.2515s0064 I 0.788
Carubv10015035m.g Capsella rubella Carubv10015035m.g I 0.788
evm.TU.supercontig_638.2 Carica papaya evm.TU.supercontig_638.2 I 0.788
Bo5g138130 Brassica oleracea Bo5g138130 I 0.773
POPTR_0006s13230 Populus trichocarpa POPTR_0006s13230 I 0.773
Solyc09g007500.2 Solanum lycopersicum Solyc09g007500.2 I 0.773
Cla018106 Citrullus lanatus Cla018106 I 0.773
29805.m001471 Ricinus communis 29805.m001471 I 0.773
Cucsa.124240 Cucumis sativus Cucsa.124240 I 0.773
Ciclev10013218m.g Citrus clementina Ciclev10013218m.g I 0.773
Gorai.006G168100 Gossypium raimondii Gorai.006G168100 I 0.773
Gorai.009G419300 Gossypium raimondii Gorai.009G419300 I 0.773
orange1.1g044991m.g Citrus sinensis orange1.1g044991m.g I 0.773
SapurV1A.0112s0080 Salix purpurea SapurV1A.0112s0080 I 0.773
fgenesh2_kg.3__997__AT3G09735.1 Arabidopsis lyrata fgenesh2_kg.3__997__AT3G09735.1 I 0.766
S1FA3 Arabidopsis thaliana AT3G09735 D 0.758
Bo3g061880 Brassica oleracea Bo3g061880 I 0.758
GLYMA03G33640 Glycine max GLYMA03G33640 I 0.758
PGSC0003DMG400020934 Solanum tuberosum PGSC0003DMG400020934 I 0.758
cassava45931.m1 Manihot esculenta cassava45931.m1 I 0.758
Cucsa.307040 Cucumis sativus Cucsa.307040 I 0.758
Aquca_027_00077 Aquilegia coerulea Aquca_027_00077 I 0.758
Eucgr.A01168 Eucalyptus grandis Eucgr.A01168 I 0.758
Gorai.002G249300 Gossypium raimondii Gorai.002G249300 I 0.758
SapurV1A.0209s0130 Salix purpurea SapurV1A.0209s0130 I 0.758
GLYMA19G36350 Glycine max GLYMA19G36350 I 0.742
PGSC0003DMG401017590 Solanum tuberosum PGSC0003DMG401017590 I 0.742
POPTR_0016s08890 Populus trichocarpa POPTR_0016s08890 I 0.742
PRUPE_ppa014157mg Prunus persica PRUPE_ppa014157mg N 0.742
Cla018556 Citrullus lanatus Cla018556 I 0.742
Pm002519 Prunus mume Pm002519 N 0.742
BGIOSGA015142 Oryza indica BGIOSGA015142 N 0.727
BGIOSGA015145 Oryza indica BGIOSGA015145 N 0.727
GLYMA10G05790 Glycine max GLYMA10G05790 I 0.727
OB04G18780 Oryza brachyantha OB04G18780 I 0.727
OBART04G11660 Oryza barthii OBART04G11660 N 0.727
OGLUM04G11340 Oryza glumaepatula OGLUM04G11340 N 0.727
OMERI04G10280 Oryza meridionalis OMERI04G10280 N 0.727
ONIVA04G09620 Oryza nivara ONIVA04G09620 N 0.727
OPUNC04G09660 Oryza punctata OPUNC04G09660 N 0.727
ORGLA04G0086800 Oryza glaberrima ORGLA04G0086800 N 0.727
ORUFI04G12850 Oryza rufipogon ORUFI04G12850 N 0.727
OS04G0408900 Oryza sativa OS04G0408900 N 0.727
TCM_022113 Theobroma cacao TCM_022113 I 0.727
gene09647-v1.0-hybrid Fragaria vesca gene09647-v1.0-hybrid N 0.727
Lus10015073.g Linum usitatissimum Lus10015073.g I 0.727
Lus10023177.g Linum usitatissimum Lus10023177.g I 0.727
Pavir.Ga01929 Panicum virgatum Pavir.Ga01929 N 0.727
AMTR_s00052p00202630 Amborella trichopoda AMTR_s00052p00202630 I 0.712
BRADI5G09140 Brachypodium distachyon BRADI5G09140 N 0.712
GLYMA13G20160 Glycine max GLYMA13G20160 I 0.712
MLOC_67411 Hordeum vulgare MLOC_67411 N 0.712
MTR_7g100905 Medicago truncatula MTR_7g100905 I 0.712
Sb06g015340 Sorghum bicolor Sb06g015340 N 0.712
Si011030m.g Setaria italica Si011030m.g N 0.712
Traes_2AL_65586C538 Triticum aestivum Traes_2AL_65586C538 N 0.712
Traes_2BL_26A5F9082 Triticum aestivum Traes_2BL_26A5F9082 N 0.712
Traes_2DL_032C7FC8C Triticum aestivum Traes_2DL_032C7FC8C N 0.712
Ca_12027 Cicer arietinum Ca_12027 I 0.712
Ca_12028 Cicer arietinum Ca_12028 I 0.712
MDP0000276000 Malus domestica MDP0000276000 N 0.712
Pavir.Gb01773 Panicum virgatum Pavir.Gb01773 N 0.712
PK08477.1 Cannabis sativa PK08477.1 I 0.712
chr1.CM0033.550.nc Lotus japonicus chr1.CM0033.550.nc I 0.712