Bostr.11793s0058 (Boechera stricta)
S1FA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04689 (S1FA) IPR006779 Bostr.11793s0058 T321482_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
S1FA3
M07252_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
AT3G09735_col_a 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.11793s0058.1.p S1FA 11 76

Links

Other S1FA family TFs
Other Boechera stricta TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
S1FA1 Arabidopsis thaliana AT3G53370 I 0.955
fgenesh1_pm.C_scaffold_5001425 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001425 I 0.955
Bo6g067310 Brassica oleracea Bo6g067310 I 0.924
Bra003132 Brassica rapa Bra003132 I 0.924
Cagra.0612s0062 Capsella grandiflora Cagra.0612s0062 I 0.924
Carubv10018341m.g Capsella rubella Carubv10018341m.g I 0.924
Thhalv10010878m.g Eutrema salsugineum Thhalv10010878m.g I 0.909
scaffold_402348.1 Arabidopsis lyrata scaffold_402348.1 I 0.879
Cagra.0666s0032 Capsella grandiflora Cagra.0666s0032 I 0.864
Carubv10025429m.g Capsella rubella Carubv10025429m.g I 0.864
Thhalv10017496m.g Eutrema salsugineum Thhalv10017496m.g I 0.864
S1FA2 Arabidopsis thaliana AT2G37120 I 0.848
Bo00703s130 Brassica oleracea Bo00703s130 I 0.848
Bo00703s150 Brassica oleracea Bo00703s150 I 0.848
Bra006994 Brassica rapa Bra006994 I 0.848
Bostr.23794s0377 Boechera stricta Bostr.23794s0377 I 0.848
Bra039779 Brassica rapa Bra039779 I 0.833
GSMUA_Achr10G13120_001 Musa acuminata GSMUA_Achr10G13120_001 I 0.758
POPTR_0006s13230 Populus trichocarpa POPTR_0006s13230 I 0.758
mgf000337m Mimulus guttatus mgf000337m I 0.758
Gorai.006G168100 Gossypium raimondii Gorai.006G168100 I 0.758
Thhalv10021874m.g Eutrema salsugineum Thhalv10021874m.g I 0.758
Bra029784 Brassica rapa Bra029784 I 0.742
Cagra.2515s0064 Capsella grandiflora Cagra.2515s0064 I 0.742
Carubv10015035m.g Capsella rubella Carubv10015035m.g I 0.742
Ciclev10013218m.g Citrus clementina Ciclev10013218m.g I 0.742
Eucgr.A01168 Eucalyptus grandis Eucgr.A01168 I 0.742
evm.TU.supercontig_638.2 Carica papaya evm.TU.supercontig_638.2 I 0.742
Gorai.002G249300 Gossypium raimondii Gorai.002G249300 I 0.742
Gorai.009G419300 Gossypium raimondii Gorai.009G419300 I 0.742
orange1.1g044991m.g Citrus sinensis orange1.1g044991m.g I 0.742
S1FA3 Arabidopsis thaliana AT3G09735 D 0.727
BGIOSGA015142 Oryza indica BGIOSGA015142 N 0.727
BGIOSGA015145 Oryza indica BGIOSGA015145 N 0.727
Bo1g144300 Brassica oleracea Bo1g144300 I 0.727
Bo3g061880 Brassica oleracea Bo3g061880 I 0.727
Bo5g138130 Brassica oleracea Bo5g138130 I 0.727
Bra034084 Brassica rapa Bra034084 I 0.727
GLYMA03G33640 Glycine max GLYMA03G33640 I 0.727
OBART04G11660 Oryza barthii OBART04G11660 N 0.727
OGLUM04G11340 Oryza glumaepatula OGLUM04G11340 N 0.727
OMERI04G10280 Oryza meridionalis OMERI04G10280 N 0.727
ONIVA04G09620 Oryza nivara ONIVA04G09620 N 0.727
OPUNC04G09660 Oryza punctata OPUNC04G09660 N 0.727
ORGLA04G0086800 Oryza glaberrima ORGLA04G0086800 N 0.727
ORUFI04G12850 Oryza rufipogon ORUFI04G12850 N 0.727
OS04G0408900 Oryza sativa OS04G0408900 N 0.727
TCM_022113 Theobroma cacao TCM_022113 I 0.727
VIT_06s0004g03160 Vitis vinifera VIT_06s0004g03160 I 0.727
mgf004062m Mimulus guttatus mgf004062m I 0.727
Bostr.22252s0094 Boechera stricta Bostr.22252s0094 I 0.727
Lus10015073.g Linum usitatissimum Lus10015073.g I 0.727
Lus10023177.g Linum usitatissimum Lus10023177.g I 0.727
Pavir.Ga01929 Panicum virgatum Pavir.Ga01929 N 0.727
SapurV1A.0112s0080 Salix purpurea SapurV1A.0112s0080 I 0.727
fgenesh2_kg.3__997__AT3G09735.1 Arabidopsis lyrata fgenesh2_kg.3__997__AT3G09735.1 I 0.719
GLYMA10G05790 Glycine max GLYMA10G05790 I 0.712
GLYMA19G36350 Glycine max GLYMA19G36350 I 0.712
MTR_7g100905 Medicago truncatula MTR_7g100905 I 0.712
OB04G18770 Oryza brachyantha OB04G18770 I 0.712
OB04G18780 Oryza brachyantha OB04G18780 I 0.712
POPTR_0016s08890 Populus trichocarpa POPTR_0016s08890 I 0.712
PRUPE_ppa014157mg Prunus persica PRUPE_ppa014157mg N 0.712
Sb06g015340 Sorghum bicolor Sb06g015340 N 0.712
Si011030m.g Setaria italica Si011030m.g N 0.712
Cla018106 Citrullus lanatus Cla018106 I 0.712
Pm002519 Prunus mume Pm002519 N 0.712
cassava45931.m1 Manihot esculenta cassava45931.m1 I 0.712
Cucsa.124240 Cucumis sativus Cucsa.124240 I 0.712
Cucsa.307040 Cucumis sativus Cucsa.307040 I 0.712
Pavir.Gb01773 Panicum virgatum Pavir.Gb01773 N 0.712
SapurV1A.0209s0130 Salix purpurea SapurV1A.0209s0130 I 0.712