Gorai.006G168100 (Gossypium raimondii)
S1FA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04689 (S1FA) IPR006779 Gorai.006G168100 T321505_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
S1FA3
M07252_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
AT3G09735_col_a 		0.773 0.773
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.006G168100.1 S1FA 25 90

Links

Other S1FA family TFs
Other Gossypium raimondii TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.002G249300 Gossypium raimondii Gorai.002G249300 I 0.909
Gorai.009G419300 Gossypium raimondii Gorai.009G419300 I 0.909
TCM_022113 Theobroma cacao TCM_022113 I 0.894
GLYMA03G33640 Glycine max GLYMA03G33640 I 0.864
POPTR_0006s13230 Populus trichocarpa POPTR_0006s13230 I 0.864
GSMUA_Achr10G13120_001 Musa acuminata GSMUA_Achr10G13120_001 I 0.848
VIT_06s0004g03160 Vitis vinifera VIT_06s0004g03160 I 0.848
Cla018106 Citrullus lanatus Cla018106 I 0.848
Cucsa.124240 Cucumis sativus Cucsa.124240 I 0.848
Cucsa.307040 Cucumis sativus Cucsa.307040 I 0.848
mgf000337m Mimulus guttatus mgf000337m I 0.848
Eucgr.A01168 Eucalyptus grandis Eucgr.A01168 I 0.848
SapurV1A.0112s0080 Salix purpurea SapurV1A.0112s0080 I 0.848
SapurV1A.0209s0130 Salix purpurea SapurV1A.0209s0130 I 0.848
GLYMA13G20160 Glycine max GLYMA13G20160 I 0.833
GLYMA19G36350 Glycine max GLYMA19G36350 I 0.833
POPTR_0016s08890 Populus trichocarpa POPTR_0016s08890 I 0.833
Solyc09g007500.2 Solanum lycopersicum Solyc09g007500.2 I 0.833
Cla018556 Citrullus lanatus Cla018556 I 0.833
Ciclev10013218m.g Citrus clementina Ciclev10013218m.g I 0.833
orange1.1g044991m.g Citrus sinensis orange1.1g044991m.g I 0.833
chr1.CM0033.550.nc Lotus japonicus chr1.CM0033.550.nc I 0.833
MDP0000559232 Malus domestica MDP0000559232 N 0.821
GLYMA10G05790 Glycine max GLYMA10G05790 I 0.818
LPERR04G08410 Leersia perrieri LPERR04G08410 I 0.818
OB04G18770 Oryza brachyantha OB04G18770 I 0.818
OB04G18780 Oryza brachyantha OB04G18780 I 0.818
PGSC0003DMG400001772 Solanum tuberosum PGSC0003DMG400001772 I 0.818
PRUPE_ppa014157mg Prunus persica PRUPE_ppa014157mg N 0.818
VIT_08s0040g02220 Vitis vinifera VIT_08s0040g02220 I 0.818
Pm002519 Prunus mume Pm002519 N 0.818
Lus10015073.g Linum usitatissimum Lus10015073.g I 0.818
Lus10023177.g Linum usitatissimum Lus10023177.g I 0.818
S1FA1 Arabidopsis thaliana AT3G53370 I 0.803
BGIOSGA015142 Oryza indica BGIOSGA015142 N 0.803
BGIOSGA015143 Oryza indica BGIOSGA015143 N 0.803
BGIOSGA015145 Oryza indica BGIOSGA015145 N 0.803
fgenesh1_pm.C_scaffold_5001425 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001425 I 0.803
LPERR04G08400 Leersia perrieri LPERR04G08400 N 0.803
OBART04G11650 Oryza barthii OBART04G11650 N 0.803
OBART04G11660 Oryza barthii OBART04G11660 N 0.803
OGLUM04G11330 Oryza glumaepatula OGLUM04G11330 N 0.803
OGLUM04G11340 Oryza glumaepatula OGLUM04G11340 N 0.803
OMERI04G10280 Oryza meridionalis OMERI04G10280 N 0.803
ONIVA04G09610 Oryza nivara ONIVA04G09610 N 0.803
ONIVA04G09620 Oryza nivara ONIVA04G09620 N 0.803
OPUNC04G09660 Oryza punctata OPUNC04G09660 N 0.803
ORGLA04G0086600 Oryza glaberrima ORGLA04G0086600 N 0.803
ORGLA04G0086800 Oryza glaberrima ORGLA04G0086800 N 0.803
ORUFI04G12840 Oryza rufipogon ORUFI04G12840 N 0.803
ORUFI04G12850 Oryza rufipogon ORUFI04G12850 N 0.803
S1FA2 Oryza sativa OS04G0408700 N 0.803
OS04G0408900 Oryza sativa OS04G0408900 N 0.803
29805.m001471 Ricinus communis 29805.m001471 I 0.803
cassava45931.m1 Manihot esculenta cassava45931.m1 I 0.803
Aquca_027_00077 Aquilegia coerulea Aquca_027_00077 I 0.803
evm.TU.supercontig_638.2 Carica papaya evm.TU.supercontig_638.2 I 0.803
MDP0000276000 Malus domestica MDP0000276000 N 0.803
AMTR_s00052p00202630 Amborella trichopoda AMTR_s00052p00202630 I 0.788
Bo6g067310 Brassica oleracea Bo6g067310 I 0.788
Bra003132 Brassica rapa Bra003132 I 0.788
BRADI5G09140 Brachypodium distachyon BRADI5G09140 N 0.788
GSMUA_Achr6G23400_001 Musa acuminata GSMUA_Achr6G23400_001 N 0.788
MLOC_67411 Hordeum vulgare MLOC_67411 N 0.788
MTR_7g100905 Medicago truncatula MTR_7g100905 I 0.788
OMERI04G10270 Oryza meridionalis OMERI04G10270 N 0.788
PGSC0003DMG400020934 Solanum tuberosum PGSC0003DMG400020934 I 0.788
Sb06g015340 Sorghum bicolor Sb06g015340 N 0.788
Si011030m.g Setaria italica Si011030m.g N 0.788
Traes_2AL_65586C538 Triticum aestivum Traes_2AL_65586C538 N 0.788
Traes_2BL_26A5F9082 Triticum aestivum Traes_2BL_26A5F9082 N 0.788
Traes_2DL_032C7FC8C Triticum aestivum Traes_2DL_032C7FC8C N 0.788
mgf004062m Mimulus guttatus mgf004062m I 0.788
gene09647-v1.0-hybrid Fragaria vesca gene09647-v1.0-hybrid N 0.788
Pavir.Ga01929 Panicum virgatum Pavir.Ga01929 N 0.788
Pavir.Gb01773 Panicum virgatum Pavir.Gb01773 N 0.788
S1FA3 Arabidopsis thaliana AT3G09735 D 0.773
Bra029784 Brassica rapa Bra029784 I 0.773
GSMUA_Achr3G17900_001 Musa acuminata GSMUA_Achr3G17900_001 N 0.773
PGSC0003DMG401017590 Solanum tuberosum PGSC0003DMG401017590 I 0.773
scaffold_402348.1 Arabidopsis lyrata scaffold_402348.1 I 0.773
Ca_12027 Cicer arietinum Ca_12027 I 0.773
Ca_12028 Cicer arietinum Ca_12028 I 0.773
Cagra.0612s0062 Capsella grandiflora Cagra.0612s0062 I 0.773
Cagra.2515s0064 Capsella grandiflora Cagra.2515s0064 I 0.773
Carubv10015035m.g Capsella rubella Carubv10015035m.g I 0.773
Carubv10018341m.g Capsella rubella Carubv10018341m.g I 0.773
Thhalv10017496m.g Eutrema salsugineum Thhalv10017496m.g I 0.773
Thhalv10021874m.g Eutrema salsugineum Thhalv10021874m.g I 0.773
TRIUR3_32840 Triticum urartu TRIUR3_32840 N 0.771
GRMZM2G056929 Zea mays GRMZM2G056929 N 0.768
S1FA2 Arabidopsis thaliana AT2G37120 I 0.758
Bo3g061880 Brassica oleracea Bo3g061880 I 0.758
Bo5g138130 Brassica oleracea Bo5g138130 I 0.758
GRMZM2G147424 Zea mays GRMZM2G147424 N 0.758
MTR_7g100880 Medicago truncatula MTR_7g100880 I 0.758
MTR_7g100890 Medicago truncatula MTR_7g100890 I 0.758
Bostr.11793s0058 Boechera stricta Bostr.11793s0058 I 0.758
Bostr.23794s0377 Boechera stricta Bostr.23794s0377 I 0.758
Cagra.0666s0032 Capsella grandiflora Cagra.0666s0032 I 0.758
Carubv10025429m.g Capsella rubella Carubv10025429m.g I 0.758
PK08477.1 Cannabis sativa PK08477.1 I 0.758
fgenesh2_kg.3__997__AT3G09735.1 Arabidopsis lyrata fgenesh2_kg.3__997__AT3G09735.1 I 0.750
Bo00703s130 Brassica oleracea Bo00703s130 I 0.742
Bo00703s150 Brassica oleracea Bo00703s150 I 0.742
Bo1g144300 Brassica oleracea Bo1g144300 I 0.742
Bra006994 Brassica rapa Bra006994 I 0.742
Bra034084 Brassica rapa Bra034084 I 0.742
Bostr.22252s0094 Boechera stricta Bostr.22252s0094 I 0.742
Thhalv10010878m.g Eutrema salsugineum Thhalv10010878m.g I 0.742
Bra039779 Brassica rapa Bra039779 I 0.727