Bra034084 (Brassica rapa)
S1FA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04689 (S1FA) IPR006779 Bra034084 T321357_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
S1FA3
M07252_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
AT3G09735_col_a 		0.939 0.939
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra034084.1-P S1FA 5 70

Links

Other S1FA family TFs
Other Brassica rapa TFs

61 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo1g144300 Brassica oleracea Bo1g144300 I 1.000
Bra029784 Brassica rapa Bra029784 I 0.970
Bostr.22252s0094 Boechera stricta Bostr.22252s0094 I 0.970
Carubv10015035m.g Capsella rubella Carubv10015035m.g I 0.970
Bo5g138130 Brassica oleracea Bo5g138130 I 0.955
Cagra.2515s0064 Capsella grandiflora Cagra.2515s0064 I 0.955
S1FA3 Arabidopsis thaliana AT3G09735 D 0.939
Thhalv10021874m.g Eutrema salsugineum Thhalv10021874m.g I 0.939
fgenesh2_kg.3__997__AT3G09735.1 Arabidopsis lyrata fgenesh2_kg.3__997__AT3G09735.1 I 0.924
Bo3g061880 Brassica oleracea Bo3g061880 I 0.909
S1FA2 Arabidopsis thaliana AT2G37120 I 0.803
POPTR_0016s08890 Populus trichocarpa POPTR_0016s08890 I 0.803
POPTR_0006s13230 Populus trichocarpa POPTR_0006s13230 I 0.788
scaffold_402348.1 Arabidopsis lyrata scaffold_402348.1 I 0.788
mgf004062m Mimulus guttatus mgf004062m I 0.788
Gorai.002G249300 Gossypium raimondii Gorai.002G249300 I 0.788
SapurV1A.0209s0130 Salix purpurea SapurV1A.0209s0130 I 0.788
Gorai.009G419300 Gossypium raimondii Gorai.009G419300 I 0.773
SapurV1A.0112s0080 Salix purpurea SapurV1A.0112s0080 I 0.773
Bo6g067310 Brassica oleracea Bo6g067310 I 0.758
Bra003132 Brassica rapa Bra003132 I 0.758
GLYMA03G33640 Glycine max GLYMA03G33640 I 0.758
GLYMA19G36350 Glycine max GLYMA19G36350 I 0.758
MTR_7g100880 Medicago truncatula MTR_7g100880 I 0.758
MTR_7g100905 Medicago truncatula MTR_7g100905 I 0.758
Bostr.23794s0377 Boechera stricta Bostr.23794s0377 I 0.758
Cagra.0666s0032 Capsella grandiflora Cagra.0666s0032 I 0.758
Carubv10025429m.g Capsella rubella Carubv10025429m.g I 0.758
evm.TU.supercontig_638.2 Carica papaya evm.TU.supercontig_638.2 I 0.758
chr1.CM0033.550.nc Lotus japonicus chr1.CM0033.550.nc I 0.758
S1FA1 Arabidopsis thaliana AT3G53370 I 0.742
Bo00703s130 Brassica oleracea Bo00703s130 I 0.742
Bo00703s150 Brassica oleracea Bo00703s150 I 0.742
Bra039779 Brassica rapa Bra039779 I 0.742
fgenesh1_pm.C_scaffold_5001425 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001425 I 0.742
GLYMA10G05790 Glycine max GLYMA10G05790 I 0.742
GLYMA13G20160 Glycine max GLYMA13G20160 I 0.742
Solyc09g007500.2 Solanum lycopersicum Solyc09g007500.2 I 0.742
TCM_022113 Theobroma cacao TCM_022113 I 0.742
Gorai.006G168100 Gossypium raimondii Gorai.006G168100 I 0.742
Thhalv10017496m.g Eutrema salsugineum Thhalv10017496m.g I 0.742
PK08477.1 Cannabis sativa PK08477.1 I 0.742
Bra006994 Brassica rapa Bra006994 I 0.727
MTR_7g100890 Medicago truncatula MTR_7g100890 I 0.727
PGSC0003DMG400001772 Solanum tuberosum PGSC0003DMG400001772 I 0.727
PGSC0003DMG400020934 Solanum tuberosum PGSC0003DMG400020934 I 0.727
Cucsa.307040 Cucumis sativus Cucsa.307040 I 0.727
mgf000337m Mimulus guttatus mgf000337m I 0.727
Bostr.11793s0058 Boechera stricta Bostr.11793s0058 I 0.727
Ciclev10013218m.g Citrus clementina Ciclev10013218m.g I 0.727
orange1.1g044991m.g Citrus sinensis orange1.1g044991m.g I 0.727
Thhalv10010878m.g Eutrema salsugineum Thhalv10010878m.g I 0.727
LPERR04G08410 Leersia perrieri LPERR04G08410 I 0.712
PGSC0003DMG401017590 Solanum tuberosum PGSC0003DMG401017590 I 0.712
VIT_06s0004g03160 Vitis vinifera VIT_06s0004g03160 I 0.712
Ca_12027 Cicer arietinum Ca_12027 I 0.712
Cla018106 Citrullus lanatus Cla018106 I 0.712
cassava45931.m1 Manihot esculenta cassava45931.m1 I 0.712
Cucsa.124240 Cucumis sativus Cucsa.124240 I 0.712
Cagra.0612s0062 Capsella grandiflora Cagra.0612s0062 I 0.712
Carubv10018341m.g Capsella rubella Carubv10018341m.g I 0.712