chr1.CM0033.550.nc (Lotus japonicus)
S1FA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04689 (S1FA) IPR006779 chr1.CM0033.550.nc T321533_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
S1FA3
M07252_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
AT3G09735_col_a 		0.773 0.773
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr1.CM0033.550.nc S1FA 24 89

Links

Other S1FA family TFs
Other Lotus japonicus TFs

97 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA03G33640 Glycine max GLYMA03G33640 I 0.894
GLYMA19G36350 Glycine max GLYMA19G36350 I 0.894
Ca_12027 Cicer arietinum Ca_12027 I 0.879
Ca_12028 Cicer arietinum Ca_12028 I 0.879
GLYMA13G20160 Glycine max GLYMA13G20160 I 0.864
POPTR_0006s13230 Populus trichocarpa POPTR_0006s13230 I 0.864
Gorai.009G419300 Gossypium raimondii Gorai.009G419300 I 0.864
GLYMA10G05790 Glycine max GLYMA10G05790 I 0.848
mgf000337m Mimulus guttatus mgf000337m I 0.848
SapurV1A.0112s0080 Salix purpurea SapurV1A.0112s0080 I 0.848
SapurV1A.0209s0130 Salix purpurea SapurV1A.0209s0130 I 0.848
MTR_7g100880 Medicago truncatula MTR_7g100880 I 0.833
MTR_7g100905 Medicago truncatula MTR_7g100905 I 0.833
evm.TU.supercontig_638.2 Carica papaya evm.TU.supercontig_638.2 I 0.833
Gorai.006G168100 Gossypium raimondii Gorai.006G168100 I 0.833
PGSC0003DMG400020934 Solanum tuberosum PGSC0003DMG400020934 I 0.818
POPTR_0016s08890 Populus trichocarpa POPTR_0016s08890 I 0.818
Solyc09g007500.2 Solanum lycopersicum Solyc09g007500.2 I 0.818
VIT_06s0004g03160 Vitis vinifera VIT_06s0004g03160 I 0.818
Ciclev10013218m.g Citrus clementina Ciclev10013218m.g I 0.818
orange1.1g044991m.g Citrus sinensis orange1.1g044991m.g I 0.818
MTR_7g100890 Medicago truncatula MTR_7g100890 I 0.803
PGSC0003DMG400001772 Solanum tuberosum PGSC0003DMG400001772 I 0.803
PGSC0003DMG401017590 Solanum tuberosum PGSC0003DMG401017590 I 0.803
TCM_022113 Theobroma cacao TCM_022113 I 0.803
Cla018556 Citrullus lanatus Cla018556 I 0.788
29805.m001471 Ricinus communis 29805.m001471 I 0.788
Cucsa.124240 Cucumis sativus Cucsa.124240 I 0.788
Eucgr.A01168 Eucalyptus grandis Eucgr.A01168 I 0.788
Gorai.002G249300 Gossypium raimondii Gorai.002G249300 I 0.788
PK08477.1 Cannabis sativa PK08477.1 I 0.788
AMTR_s00052p00202630 Amborella trichopoda AMTR_s00052p00202630 I 0.773
S1FA3 Arabidopsis thaliana AT3G09735 D 0.773
Bra029784 Brassica rapa Bra029784 I 0.773
OB04G18770 Oryza brachyantha OB04G18770 I 0.773
cassava45931.m1 Manihot esculenta cassava45931.m1 I 0.773
mgf004062m Mimulus guttatus mgf004062m I 0.773
Cagra.2515s0064 Capsella grandiflora Cagra.2515s0064 I 0.773
Carubv10015035m.g Capsella rubella Carubv10015035m.g I 0.773
gene09647-v1.0-hybrid Fragaria vesca gene09647-v1.0-hybrid N 0.773
Thhalv10021874m.g Eutrema salsugineum Thhalv10021874m.g I 0.773
Bo1g144300 Brassica oleracea Bo1g144300 I 0.758
Bo5g138130 Brassica oleracea Bo5g138130 I 0.758
Bra034084 Brassica rapa Bra034084 I 0.758
GSMUA_Achr10G13120_001 Musa acuminata GSMUA_Achr10G13120_001 I 0.758
GSMUA_Achr3G17900_001 Musa acuminata GSMUA_Achr3G17900_001 N 0.758
OB04G18780 Oryza brachyantha OB04G18780 I 0.758
Cla018106 Citrullus lanatus Cla018106 I 0.758
Cucsa.307040 Cucumis sativus Cucsa.307040 I 0.758
Aquca_027_00077 Aquilegia coerulea Aquca_027_00077 I 0.758
Bostr.22252s0094 Boechera stricta Bostr.22252s0094 I 0.758
MDP0000276000 Malus domestica MDP0000276000 N 0.758
fgenesh2_kg.3__997__AT3G09735.1 Arabidopsis lyrata fgenesh2_kg.3__997__AT3G09735.1 I 0.750
BGIOSGA015142 Oryza indica BGIOSGA015142 N 0.742
BGIOSGA015143 Oryza indica BGIOSGA015143 N 0.742
BGIOSGA015145 Oryza indica BGIOSGA015145 N 0.742
Bo3g061880 Brassica oleracea Bo3g061880 I 0.742
LPERR04G08410 Leersia perrieri LPERR04G08410 I 0.742
OBART04G11650 Oryza barthii OBART04G11650 N 0.742
OBART04G11660 Oryza barthii OBART04G11660 N 0.742
OGLUM04G11330 Oryza glumaepatula OGLUM04G11330 N 0.742
OGLUM04G11340 Oryza glumaepatula OGLUM04G11340 N 0.742
OMERI04G10280 Oryza meridionalis OMERI04G10280 N 0.742
ONIVA04G09610 Oryza nivara ONIVA04G09610 N 0.742
ONIVA04G09620 Oryza nivara ONIVA04G09620 N 0.742
OPUNC04G09660 Oryza punctata OPUNC04G09660 N 0.742
ORGLA04G0086600 Oryza glaberrima ORGLA04G0086600 N 0.742
ORGLA04G0086800 Oryza glaberrima ORGLA04G0086800 N 0.742
ORUFI04G12840 Oryza rufipogon ORUFI04G12840 N 0.742
ORUFI04G12850 Oryza rufipogon ORUFI04G12850 N 0.742
S1FA2 Oryza sativa OS04G0408700 N 0.742
OS04G0408900 Oryza sativa OS04G0408900 N 0.742
VIT_08s0040g02220 Vitis vinifera VIT_08s0040g02220 I 0.742
Lus10015073.g Linum usitatissimum Lus10015073.g I 0.742
Lus10023177.g Linum usitatissimum Lus10023177.g I 0.742
GRMZM2G056929 Zea mays GRMZM2G056929 N 0.732
BRADI5G09140 Brachypodium distachyon BRADI5G09140 N 0.727
GSMUA_Achr6G23400_001 Musa acuminata GSMUA_Achr6G23400_001 N 0.727
LPERR04G08400 Leersia perrieri LPERR04G08400 N 0.727
MLOC_67411 Hordeum vulgare MLOC_67411 N 0.727
OMERI04G10270 Oryza meridionalis OMERI04G10270 N 0.727
PRUPE_ppa014157mg Prunus persica PRUPE_ppa014157mg N 0.727
Sb06g015340 Sorghum bicolor Sb06g015340 N 0.727
Si011030m.g Setaria italica Si011030m.g N 0.727
Traes_2AL_65586C538 Triticum aestivum Traes_2AL_65586C538 N 0.727
Traes_2BL_26A5F9082 Triticum aestivum Traes_2BL_26A5F9082 N 0.727
Traes_2DL_032C7FC8C Triticum aestivum Traes_2DL_032C7FC8C N 0.727
Pm002519 Prunus mume Pm002519 N 0.727
Pavir.Ga01929 Panicum virgatum Pavir.Ga01929 N 0.727
Pavir.Gb01773 Panicum virgatum Pavir.Gb01773 N 0.727
Thhalv10017496m.g Eutrema salsugineum Thhalv10017496m.g I 0.727
S1FA1 Arabidopsis thaliana AT3G53370 I 0.712
fgenesh1_pm.C_scaffold_5001425 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001425 I 0.712
scaffold_402348.1 Arabidopsis lyrata scaffold_402348.1 I 0.712
Bostr.23794s0377 Boechera stricta Bostr.23794s0377 I 0.712
Cagra.0666s0032 Capsella grandiflora Cagra.0666s0032 I 0.712
Carubv10025429m.g Capsella rubella Carubv10025429m.g I 0.712