Gorai.002G249300 (Gossypium raimondii)
S1FA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04689 (S1FA) IPR006779 Gorai.002G249300 T321504_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
S1FA3
M07252_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
AT3G09735_col_a 		0.803 0.803
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.002G249300.1 S1FA 17 82
Gorai.002G249300.2 S1FA 14 79

Links

Other S1FA family TFs
Other Gossypium raimondii TFs

110 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.006G168100 Gossypium raimondii Gorai.006G168100 I 0.909
Gorai.009G419300 Gossypium raimondii Gorai.009G419300 I 0.909
TCM_022113 Theobroma cacao TCM_022113 I 0.879
GLYMA03G33640 Glycine max GLYMA03G33640 I 0.864
POPTR_0006s13230 Populus trichocarpa POPTR_0006s13230 I 0.864
Cucsa.124240 Cucumis sativus Cucsa.124240 I 0.864
Solyc09g007500.2 Solanum lycopersicum Solyc09g007500.2 I 0.848
Ciclev10013218m.g Citrus clementina Ciclev10013218m.g I 0.848
Lus10015073.g Linum usitatissimum Lus10015073.g I 0.848
Lus10023177.g Linum usitatissimum Lus10023177.g I 0.848
orange1.1g044991m.g Citrus sinensis orange1.1g044991m.g I 0.848
SapurV1A.0209s0130 Salix purpurea SapurV1A.0209s0130 I 0.848
GLYMA19G36350 Glycine max GLYMA19G36350 I 0.833
MTR_7g100905 Medicago truncatula MTR_7g100905 I 0.833
PGSC0003DMG400001772 Solanum tuberosum PGSC0003DMG400001772 I 0.833
POPTR_0016s08890 Populus trichocarpa POPTR_0016s08890 I 0.833
VIT_06s0004g03160 Vitis vinifera VIT_06s0004g03160 I 0.833
Cla018106 Citrullus lanatus Cla018106 I 0.833
Cla018556 Citrullus lanatus Cla018556 I 0.833
29805.m001471 Ricinus communis 29805.m001471 I 0.833
Cucsa.307040 Cucumis sativus Cucsa.307040 I 0.833
SapurV1A.0112s0080 Salix purpurea SapurV1A.0112s0080 I 0.833
Bra029784 Brassica rapa Bra029784 I 0.818
GLYMA10G05790 Glycine max GLYMA10G05790 I 0.818
PGSC0003DMG400020934 Solanum tuberosum PGSC0003DMG400020934 I 0.818
cassava45931.m1 Manihot esculenta cassava45931.m1 I 0.818
Cagra.2515s0064 Capsella grandiflora Cagra.2515s0064 I 0.818
Carubv10015035m.g Capsella rubella Carubv10015035m.g I 0.818
Thhalv10021874m.g Eutrema salsugineum Thhalv10021874m.g I 0.818
S1FA3 Arabidopsis thaliana AT3G09735 D 0.803
Bo5g138130 Brassica oleracea Bo5g138130 I 0.803
GLYMA13G20160 Glycine max GLYMA13G20160 I 0.803
GSMUA_Achr10G13120_001 Musa acuminata GSMUA_Achr10G13120_001 I 0.803
LPERR04G08410 Leersia perrieri LPERR04G08410 I 0.803
MTR_7g100880 Medicago truncatula MTR_7g100880 I 0.803
MTR_7g100890 Medicago truncatula MTR_7g100890 I 0.803
PGSC0003DMG401017590 Solanum tuberosum PGSC0003DMG401017590 I 0.803
PRUPE_ppa014157mg Prunus persica PRUPE_ppa014157mg N 0.803
VIT_08s0040g02220 Vitis vinifera VIT_08s0040g02220 I 0.803
Pm002519 Prunus mume Pm002519 N 0.803
mgf000337m Mimulus guttatus mgf000337m I 0.803
mgf004062m Mimulus guttatus mgf004062m I 0.803
Eucgr.A01168 Eucalyptus grandis Eucgr.A01168 I 0.803
evm.TU.supercontig_638.2 Carica papaya evm.TU.supercontig_638.2 I 0.803
BGIOSGA015142 Oryza indica BGIOSGA015142 N 0.788
BGIOSGA015145 Oryza indica BGIOSGA015145 N 0.788
Bo1g144300 Brassica oleracea Bo1g144300 I 0.788
Bra034084 Brassica rapa Bra034084 I 0.788
GSMUA_Achr6G23400_001 Musa acuminata GSMUA_Achr6G23400_001 N 0.788
OBART04G11660 Oryza barthii OBART04G11660 N 0.788
OGLUM04G11340 Oryza glumaepatula OGLUM04G11340 N 0.788
OMERI04G10280 Oryza meridionalis OMERI04G10280 N 0.788
ONIVA04G09620 Oryza nivara ONIVA04G09620 N 0.788
OPUNC04G09660 Oryza punctata OPUNC04G09660 N 0.788
ORGLA04G0086800 Oryza glaberrima ORGLA04G0086800 N 0.788
ORUFI04G12850 Oryza rufipogon ORUFI04G12850 N 0.788
OS04G0408900 Oryza sativa OS04G0408900 N 0.788
Ca_12027 Cicer arietinum Ca_12027 I 0.788
Bostr.22252s0094 Boechera stricta Bostr.22252s0094 I 0.788
chr1.CM0033.550.nc Lotus japonicus chr1.CM0033.550.nc I 0.788
S1FA2 Arabidopsis thaliana AT2G37120 I 0.773
fgenesh2_kg.3__997__AT3G09735.1 Arabidopsis lyrata fgenesh2_kg.3__997__AT3G09735.1 I 0.773
OB04G18770 Oryza brachyantha OB04G18770 I 0.773
OB04G18780 Oryza brachyantha OB04G18780 I 0.773
Ca_12028 Cicer arietinum Ca_12028 I 0.773
Aquca_027_00077 Aquilegia coerulea Aquca_027_00077 I 0.773
gene09647-v1.0-hybrid Fragaria vesca gene09647-v1.0-hybrid N 0.773
AMTR_s00052p00202630 Amborella trichopoda AMTR_s00052p00202630 I 0.758
S1FA1 Arabidopsis thaliana AT3G53370 I 0.758
BGIOSGA015143 Oryza indica BGIOSGA015143 N 0.758
Bo3g061880 Brassica oleracea Bo3g061880 I 0.758
Bo6g067310 Brassica oleracea Bo6g067310 I 0.758
Bra003132 Brassica rapa Bra003132 I 0.758
Bra006994 Brassica rapa Bra006994 I 0.758
fgenesh1_pm.C_scaffold_5001425 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001425 I 0.758
LPERR04G08400 Leersia perrieri LPERR04G08400 N 0.758
OBART04G11650 Oryza barthii OBART04G11650 N 0.758
OGLUM04G11330 Oryza glumaepatula OGLUM04G11330 N 0.758
ONIVA04G09610 Oryza nivara ONIVA04G09610 N 0.758
ORGLA04G0086600 Oryza glaberrima ORGLA04G0086600 N 0.758
ORUFI04G12840 Oryza rufipogon ORUFI04G12840 N 0.758
S1FA2 Oryza sativa OS04G0408700 N 0.758
scaffold_402348.1 Arabidopsis lyrata scaffold_402348.1 I 0.758
MDP0000276000 Malus domestica MDP0000276000 N 0.758
Thhalv10017496m.g Eutrema salsugineum Thhalv10017496m.g I 0.758
Bo00703s130 Brassica oleracea Bo00703s130 I 0.742
Bo00703s150 Brassica oleracea Bo00703s150 I 0.742
BRADI5G09140 Brachypodium distachyon BRADI5G09140 N 0.742
GSMUA_Achr3G17900_001 Musa acuminata GSMUA_Achr3G17900_001 N 0.742
MLOC_67411 Hordeum vulgare MLOC_67411 N 0.742
OMERI04G10270 Oryza meridionalis OMERI04G10270 N 0.742
Si011030m.g Setaria italica Si011030m.g N 0.742
Traes_2AL_65586C538 Triticum aestivum Traes_2AL_65586C538 N 0.742
Traes_2BL_26A5F9082 Triticum aestivum Traes_2BL_26A5F9082 N 0.742
Traes_2DL_032C7FC8C Triticum aestivum Traes_2DL_032C7FC8C N 0.742
Bostr.11793s0058 Boechera stricta Bostr.11793s0058 I 0.742
Bostr.23794s0377 Boechera stricta Bostr.23794s0377 I 0.742
Cagra.0612s0062 Capsella grandiflora Cagra.0612s0062 I 0.742
Cagra.0666s0032 Capsella grandiflora Cagra.0666s0032 I 0.742
Carubv10018341m.g Capsella rubella Carubv10018341m.g I 0.742
Carubv10025429m.g Capsella rubella Carubv10025429m.g I 0.742
Pavir.Ga01929 Panicum virgatum Pavir.Ga01929 N 0.742
Pavir.Gb01773 Panicum virgatum Pavir.Gb01773 N 0.742
Bra039779 Brassica rapa Bra039779 I 0.727
Sb06g015340 Sorghum bicolor Sb06g015340 N 0.727
Thhalv10010878m.g Eutrema salsugineum Thhalv10010878m.g I 0.727
PK08477.1 Cannabis sativa PK08477.1 I 0.727
GRMZM2G056929 Zea mays GRMZM2G056929 N 0.712
GRMZM2G147424 Zea mays GRMZM2G147424 N 0.712