Cagra.0612s0062 (Capsella grandiflora)
S1FA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04689 (S1FA) IPR006779 Cagra.0612s0062 T321485_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
S1FA3
M07252_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
AT3G09735_col_a 		0.742 0.742
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0612s0062.1.p S1FA 11 76

Links

Other S1FA family TFs
Other Capsella grandiflora TFs

94 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI3G57360 Brachypodium distachyon BRADI3G57360 I 0.000
BRADI4G35650 Brachypodium distachyon BRADI4G35650 I 0.000
F775_00827 Aegilops tauschii F775_00827 I 0.000
F775_15419 Aegilops tauschii F775_15419 I 0.000
F775_25503 Aegilops tauschii F775_25503 I 0.000
GRMZM2G124011 Zea mays GRMZM2G124011 I 0.000
MLOC_54227 Hordeum vulgare MLOC_54227 I 0.000
MLOC_59224 Hordeum vulgare MLOC_59224 I 0.000
OBART09G16830 Oryza barthii OBART09G16830 I 0.000
OPUNC09G15260 Oryza punctata OPUNC09G15260 I 0.000
ORGLA08G0220100 Oryza glaberrima ORGLA08G0220100 I 0.000
Q3T5M9_WHEAT Triticum aestivum Q3T5M9_WHEAT D 0.000
Sb02g030300 Sorghum bicolor Sb02g030300 I 0.000
Traes_5BL_199A847E4 Triticum aestivum Traes_5BL_199A847E4 I 0.000
Traes_5BL_8D6C8E27F Triticum aestivum Traes_5BL_8D6C8E27F I 0.000
Traes_5BL_B6A784025 Triticum aestivum Traes_5BL_B6A784025 I 0.000
Traes_5BL_B795CE108 Triticum aestivum Traes_5BL_B795CE108 I 0.000
Traes_5DL_45B242D3E1 Triticum aestivum Traes_5DL_45B242D3E1 I 0.000
Traes_5DL_62A4CE1CC Triticum aestivum Traes_5DL_62A4CE1CC I 0.000
Traes_5DL_BFA40F938 Triticum aestivum Traes_5DL_BFA40F938 I 0.000
TRIUR3_21819 Triticum urartu TRIUR3_21819 I 0.000
TRIUR3_29805 Triticum urartu TRIUR3_29805 I 0.000