Bra030040 (Brassica rapa)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 Bra030040 T322474_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL10
M01084_2.00 		Arabidopsis thaliana
NNGTACGRHN
NDYCGTACNN		 PBM
Sullivan et al.(2014)
pTH9749 		0.980 0.947
SPL11
M02471_2.00 		Arabidopsis thaliana
NNNHGTACGGWN
NWCCGTACDNNN		 PBM
Weirauch et al.(2014)
pTH9392 		0.974 0.933
SPL11
M07254_2.00 		Arabidopsis thaliana
HTGTACTDDHH
DDHHAGTACAD		 Dap-seq
OMalley et al.(2016)
SPL11_col100_a 		0.974 0.933
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra030040.1-P SBP 172 246

Links

Other SBP family TFs
Other Brassica rapa TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30190.m010825 Ricinus communis 30190.m010825 I 0.000
Aquca_037_00132 Aquilegia coerulea Aquca_037_00132 I 0.000
BGIOSGA017525 Oryza indica BGIOSGA017525 N 0.000
Bostr.29223s0053 Boechera stricta Bostr.29223s0053 I 0.000
BRADI2G15847 Brachypodium distachyon BRADI2G15847 N 0.000
BRADI5G16450 Brachypodium distachyon BRADI5G16450 I 0.000
Cagra.0062s0002 Capsella grandiflora Cagra.0062s0002 I 0.000
Carubv10020622m.g Capsella rubella Carubv10020622m.g I 0.000
chr2.CM0060.390.nc Lotus japonicus chr2.CM0060.390.nc I 0.000
Ciclev10021265m.g Citrus clementina Ciclev10021265m.g I 0.000
Cla011093 Citrullus lanatus Cla011093 I 0.000
Cla011559 Citrullus lanatus Cla011559 I 0.000
Cucsa.303840 Cucumis sativus Cucsa.303840 I 0.000
ERF061 Arabidopsis thaliana AT1G64380 I 0.000
Eucgr.D01731 Eucalyptus grandis Eucgr.D01731 I 0.000
Eucgr.E00857 Eucalyptus grandis Eucgr.E00857 I 0.000
evm.TU.supercontig_79.43 Carica papaya evm.TU.supercontig_79.43 I 0.000
fgenesh2_kg.2__42__AT1G64380.1 Arabidopsis lyrata fgenesh2_kg.2__42__AT1G64380.1 I 0.000
gene32084-v1.0-hybrid Fragaria vesca gene32084-v1.0-hybrid I 0.000
GLYMA01G43450 Glycine max GLYMA01G43450 I 0.000
GLYMA11G02050 Glycine max GLYMA11G02050 I 0.000
Gorai.006G207800 Gossypium raimondii Gorai.006G207800 I 0.000
Gorai.007G026200 Gossypium raimondii Gorai.007G026200 N 0.000
Gorai.008G253900 Gossypium raimondii Gorai.008G253900 I 0.000
Gorai.012G130600 Gossypium raimondii Gorai.012G130600 I 0.000
GRMZM2G026926 Zea mays GRMZM2G026926 I 0.000
GRMZM2G100982 Zea mays GRMZM2G100982 I 0.000
GRMZM5G846057 Zea mays GRMZM5G846057 I 0.000
GSMUA_Achr1G00070_001 Musa acuminata GSMUA_Achr1G00070_001 I 0.000
GSMUA_Achr1G27990_001 Musa acuminata GSMUA_Achr1G27990_001 N 0.000
LPERR05G22130 Leersia perrieri LPERR05G22130 N 0.000
Lus10001898.g Linum usitatissimum Lus10001898.g I 0.000
Lus10003889.g Linum usitatissimum Lus10003889.g I 0.000
MDP0000292965 Malus domestica MDP0000292965 I 0.000
MDP0000861708 Malus domestica MDP0000861708 I 0.000
mgf016403m Mimulus guttatus mgf016403m I 0.000
mgf021167m Mimulus guttatus mgf021167m I 0.000
MLOC_53577 Hordeum vulgare MLOC_53577 N 0.000
OGLUM05G28130 Oryza glumaepatula OGLUM05G28130 N 0.000
ONIVA05G28560 Oryza nivara ONIVA05G28560 N 0.000
OPUNC05G24070 Oryza punctata OPUNC05G24070 N 0.000
orange1.1g045091m.g Citrus sinensis orange1.1g045091m.g I 0.000
ORGLA05G0229700 Oryza glaberrima ORGLA05G0229700 N 0.000
ORUFI05G28440 Oryza rufipogon ORUFI05G28440 N 0.000
OS05G0572000 Oryza sativa OS05G0572000 N 0.000
Pavir.Ga00913 Panicum virgatum Pavir.Ga00913 I 0.000
Pavir.Gb00710 Panicum virgatum Pavir.Gb00710 I 0.000
Pavir.J01332 Panicum virgatum Pavir.J01332 N 0.000
Pavir.J10163 Panicum virgatum Pavir.J10163 N 0.000
Pm024053 Prunus mume Pm024053 I 0.000
POPTR_0001s10540 Populus trichocarpa POPTR_0001s10540 I 0.000
PRUPE_ppa009005mg Prunus persica PRUPE_ppa009005mg I 0.000
SapurV1A.0035s0570 Salix purpurea SapurV1A.0035s0570 I 0.000
SapurV1A.0237s0310 Salix purpurea SapurV1A.0237s0310 I 0.000
Sb06g023313 Sorghum bicolor Sb06g023313 I 0.000
Sb09g029070 Sorghum bicolor Sb09g029070 N 0.000
Si012169m.g Setaria italica Si012169m.g I 0.000
Thhalv10023588m.g Eutrema salsugineum Thhalv10023588m.g I 0.000
VIT_19s0014g03180 Vitis vinifera VIT_19s0014g03180 I 0.000