Bra032823 (Brassica rapa)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 Bra032823 T322478_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL10
M01084_2.00 		Arabidopsis thaliana
NNGTACGRHN
NDYCGTACNN		 PBM
Sullivan et al.(2014)
pTH9749 		0.987 0.933
SPL11
M02471_2.00 		Arabidopsis thaliana
NNNHGTACGGWN
NWCCGTACDNNN		 PBM
Weirauch et al.(2014)
pTH9392 		0.970 0.907
SPL11
M07254_2.00 		Arabidopsis thaliana
HTGTACTDDHH
DDHHAGTACAD		 Dap-seq
OMalley et al.(2016)
SPL11_col100_a 		0.970 0.907
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra032823.1-P SBP 154 228

Links

Other SBP family TFs
Other Brassica rapa TFs

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29929.m004641 Ricinus communis 29929.m004641 I 0.898
Bo3g141480 Brassica oleracea Bo3g141480 I 0.965
Bo5g051970 Brassica oleracea Bo5g051970 I 0.990
Bo5g051980 Brassica oleracea Bo5g051980 I 0.984
Bo7g049940 Brassica oleracea Bo7g049940 I 0.985
Bo7g049950 Brassica oleracea Bo7g049950 I 0.981
Bostr.15697s0062 Boechera stricta Bostr.15697s0062 I 0.981
Bostr.15697s0063 Boechera stricta Bostr.15697s0063 I 0.979
Bra010949 Brassica rapa Bra010949 I 0.981
Bra030040 Brassica rapa Bra030040 I 0.984
Bra030041 Brassica rapa Bra030041 I 0.985
Bra032822 Brassica rapa Bra032822 I 0.968
BRADI3G05510 Brachypodium distachyon BRADI3G05510 I 0.889
Cagra.8874s0007 Capsella grandiflora Cagra.8874s0007 I 0.975
Cagra.8874s0008 Capsella grandiflora Cagra.8874s0008 I 0.981
Carubv10009364m.g Capsella rubella Carubv10009364m.g I 0.981
Carubv10009367m.g Capsella rubella Carubv10009367m.g I 0.975
Ca_08506 Cicer arietinum Ca_08506 I 0.964
Eucgr.B03500 Eucalyptus grandis Eucgr.B03500 I 0.937
evm.TU.supercontig_43.66 Carica papaya evm.TU.supercontig_43.66 I 0.897
GSMUA_Achr4G12470_001 Musa acuminata GSMUA_Achr4G12470_001 I 0.924
GSMUA_Achr9G23140_001 Musa acuminata GSMUA_Achr9G23140_001 I 0.895
Lus10006411.g Linum usitatissimum Lus10006411.g I 0.938
Lus10011356.g Linum usitatissimum Lus10011356.g I 0.920
PGSC0003DMG400026736 Solanum tuberosum PGSC0003DMG400026736 I 0.924
POPTR_0001s13890 Populus trichocarpa POPTR_0001s13890 I 0.903
POPTR_0003s17120 Populus trichocarpa POPTR_0003s17120 I 0.903
SapurV1A.0056s0240 Salix purpurea SapurV1A.0056s0240 I 0.903
SapurV1A.1271s0060 Salix purpurea SapurV1A.1271s0060 I 0.903
SPL10 Arabidopsis lyrata fgenesh2_kg.1__2893__AT1G27370.2 I 0.977
SPL10 Arabidopsis thaliana AT1G27370 D 0.987
SPL11 Arabidopsis lyrata scaffold_103051.1 I 0.966
SPL11 Arabidopsis thaliana AT1G27360 D 0.970
Thhalv10007832m.g Eutrema salsugineum Thhalv10007832m.g I 0.977
Thhalv10007882m.g Eutrema salsugineum Thhalv10007882m.g I 0.967
VIT_01s0010g03710 Vitis vinifera VIT_01s0010g03710 I 0.907