Cagra.8874s0007 (Capsella grandiflora)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Cagra.8874s0007 T323408_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL11
M02471_2.00 		Arabidopsis thaliana
NNNHGTACGGWN
NWCCGTACDNNN		 PBM
Weirauch et al.(2014)
pTH9392 		0.987 0.947
SPL11
M07254_2.00 		Arabidopsis thaliana
HTGTACTDDHH
DDHHAGTACAD		 Dap-seq
OMalley et al.(2016)
SPL11_col100_a 		0.987 0.947
SPL10
M01084_2.00 		Arabidopsis thaliana
NNGTACGRHN
NDYCGTACNN		 PBM
Sullivan et al.(2014)
pTH9749 		0.970 0.920
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.8874s0007.1.p SBP 176 250
Cagra.8874s0007.2.p SBP 176 250

Links

Other SBP family TFs
Other Capsella grandiflora TFs

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29872.m000548 Ricinus communis 29872.m000548 N
cassava1476.valid.m1 Manihot esculenta cassava1476.valid.m1 N
Ciclev10025757m.g Citrus clementina Ciclev10025757m.g N
Cla015679 Citrullus lanatus Cla015679 N
Cucsa.358990 Cucumis sativus Cucsa.358990 N
Eucgr.J02994 Eucalyptus grandis Eucgr.J02994 N
evm.TU.supercontig_181.13 Carica papaya evm.TU.supercontig_181.13 N
gene05956-v1.0-hybrid Fragaria vesca gene05956-v1.0-hybrid N
GLYMA15G01730 Glycine max GLYMA15G01730 N
Gorai.006G098600 Gossypium raimondii Gorai.006G098600 N
Gorai.010G228000 Gossypium raimondii Gorai.010G228000 N
MDP0000276691 Malus domestica MDP0000276691 N
MDP0000500940 Malus domestica MDP0000500940 N
mgf024433m Mimulus guttatus mgf024433m N
MTR_2g102227 Medicago truncatula MTR_2g102227 N
orange1.1g048259m.g Citrus sinensis orange1.1g048259m.g N
PGSC0003DMG400031382 Solanum tuberosum PGSC0003DMG400031382 N
PK03816.1 Cannabis sativa PK03816.1 N
Pm013502 Prunus mume Pm013502 N
Pm027397 Prunus mume Pm027397 N
POPTR_0001s18000 Populus trichocarpa POPTR_0001s18000 N
POPTR_0003s05470 Populus trichocarpa POPTR_0003s05470 N
PRUPE_ppa009556mg Prunus persica PRUPE_ppa009556mg N
SapurV1A.0002s0250 Salix purpurea SapurV1A.0002s0250 N
SapurV1A.3798s0010 Salix purpurea SapurV1A.3798s0010 N
Solyc12g043090.1 Solanum lycopersicum Solyc12g043090.1 N
VIT_09s0002g04700 Vitis vinifera VIT_09s0002g04700 N
VIT_11s0016g04130 Vitis vinifera VIT_11s0016g04130 N