Lus10021141.g (Linum usitatissimum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Lus10021141.g T323540_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL13A
M07265_2.00 		Arabidopsis thaliana
DNYGTACGGWH
DWCCGTACRNH		 Dap-seq
OMalley et al.(2016)
SPL13_col_a 		0.952 0.747
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.898 0.773
SPL14
M02470_2.00 		Arabidopsis thaliana
NNNRTACNN
NNGTAYNNN		 PBM
Weirauch et al.(2014)
pTH8191 		0.895 0.707
SPL14
M07253_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL14_col_a 		0.895 0.707
SPL14
M11270_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SPL14_01 		0.895 0.707
POPTR_0002s00440
M02477_2.00 		Populus trichocarpa
NGTACGG
CCGTACN		 PBM
Weirauch et al.(2014)
pTH9280 		0.894 0.693
SPL4
M02472_2.00 		Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN		 PBM
Weirauch et al.(2014)
pTH7408 		0.893 0.653
fgenesh1_pg.scaffold_252000020
M02481_2.00 		Physcomitrella patens
NNNKRCVNN
NNBGYMNNN		 PBM
Weirauch et al.(2014)
pTH8491 		0.893 0.707
fgenesh1_pg.scaffold_194000034
M02480_2.00 		Physcomitrella patens
NNNGTACNNN
NNNGTACNNN		 PBM
Weirauch et al.(2014)
pTH8580 		0.889 0.720
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10021141 SBP 172 246

Links

Other SBP family TFs
Other Linum usitatissimum TFs

367 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29797.m000353 Ricinus communis 29797.m000353 N
anac036 Arabidopsis lyrata fgenesh2_kg.3__3291__AT2G17040.1 N
anac036 Arabidopsis thaliana AT2G17040 N
anac036 Vitis vinifera VIT_03s0038g03410 N
Aquca_015_00469 Aquilegia coerulea Aquca_015_00469 N
Bo3g092020 Brassica oleracea Bo3g092020 N
Bo7g015050 Brassica oleracea Bo7g015050 N
Bostr.18351s0165 Boechera stricta Bostr.18351s0165 N
Bra002018 Brassica rapa Bra002018 N
Bra013034 Brassica rapa Bra013034 N
Cagra.0805s0005 Capsella grandiflora Cagra.0805s0005 N
Carubv10014350m.g Capsella rubella Carubv10014350m.g N
cassava13355.valid.m1 Manihot esculenta cassava13355.valid.m1 N
cassava30341.valid.m1 Manihot esculenta cassava30341.valid.m1 N
Ca_11128 Cicer arietinum Ca_11128 N
chr3.CM0460.350.nd Lotus japonicus chr3.CM0460.350.nd N
Ciclev10029007m.g Citrus clementina Ciclev10029007m.g N
Cla007018 Citrullus lanatus Cla007018 N
Cucsa.119310 Cucumis sativus Cucsa.119310 N
Eucgr.I01494 Eucalyptus grandis Eucgr.I01494 N
evm.TU.supercontig_320.2 Carica papaya evm.TU.supercontig_320.2 N
gene17203-v1.0-hybrid Fragaria vesca gene17203-v1.0-hybrid N
GLYMA11G10230 Glycine max GLYMA11G10230 N
GLYMA12G02540 Glycine max GLYMA12G02540 N
Gorai.002G001900 Gossypium raimondii Gorai.002G001900 N
Gorai.005G257800 Gossypium raimondii Gorai.005G257800 N
Gorai.008G038800 Gossypium raimondii Gorai.008G038800 N
Lus10003333.g Linum usitatissimum Lus10003333.g N
Lus10022636.g Linum usitatissimum Lus10022636.g N
Lus10023966.g Linum usitatissimum Lus10023966.g N
Lus10025118.g Linum usitatissimum Lus10025118.g N
MDP0000480581 Malus domestica MDP0000480581 N
MDP0000868556 Malus domestica MDP0000868556 N
mgf013168m Mimulus guttatus mgf013168m N
MTR_4g075980 Medicago truncatula MTR_4g075980 N
orange1.1g023427m.g Citrus sinensis orange1.1g023427m.g N
Pm020961 Prunus mume Pm020961 N
POPTR_0004s18860 Populus trichocarpa POPTR_0004s18860 N
POPTR_0009s14370 Populus trichocarpa POPTR_0009s14370 N
PRUPE_ppa009455mg Prunus persica PRUPE_ppa009455mg N
SapurV1A.0218s0020 Salix purpurea SapurV1A.0218s0020 N
TCM_006499 Theobroma cacao TCM_006499 N
Thhalv10022800m.g Eutrema salsugineum Thhalv10022800m.g N
VIT_04s0008g00150 Vitis vinifera VIT_04s0008g00150 N