Pavir.Gb00284 (Panicum virgatum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Pavir.Gb00284 T323634_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
fgenesh1_pg.scaffold_252000020
M02481_2.00 		Physcomitrella patens
NNNKRCVNN
NNBGYMNNN		 PBM
Weirauch et al.(2014)
pTH8491 		0.956 0.840
fgenesh1_pg.scaffold_194000034
M02480_2.00 		Physcomitrella patens
NNNGTACNNN
NNNGTACNNN		 PBM
Weirauch et al.(2014)
pTH8580 		0.950 0.827
SPL8
M02714_2.00 		Arabidopsis thaliana
DWWDDDGTACRNWNHW
WDNWNYGTACHHHWWH		 SELEX
Mathelier et al.(2014)
MA0578.1 		0.930 0.827
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Gb00284.1.p SBP 161 236

Links

Other SBP family TFs
Other Panicum virgatum TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ASIM_0000041701 Anisakis simplex ASIM_0000041701 N
augustus_masked-nMf.1.1.scaf00383-processed-gene-0.1 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf00383-processed-gene-0.1 I
BXY_0179600 Bursaphelenchus xylophilus BXY_0179600 I
CBG15006 Caenorhabditis briggsae CBG15006 I
CBN08571 Caenorhabditis brenneri CBN08571 I
CBN10811 Caenorhabditis brenneri CBN10811 I
CJA03362 Caenorhabditis japonica CJA03362 N
CRE09911 Caenorhabditis remanei CRE09911 I
CRE14116 Caenorhabditis remanei CRE14116 I
GPLIN_000686000 Globodera pallida GPLIN_000686000 N
HCOI00878400 Haemonchus contortus HCOI00878400 N
HCOI02063000 Haemonchus contortus HCOI02063000 N
HCOI02063200 Haemonchus contortus HCOI02063200 N
HCOI02063400 Haemonchus contortus HCOI02063400 N
HCOI02063800 Haemonchus contortus HCOI02063800 N
HCOI02064100 Haemonchus contortus HCOI02064100 N
L596_g25326 Steinernema carpocapsae L596_g25326 N
L889_g23169 Steinernema feltiae L889_g23169 N
L892_g27553 Steinernema scapterisci L892_g27553 N
L893_g2097 Steinernema glaseri L893_g2097 N
L898_g11980 Steinernema monticolum L898_g11980 N
Minc11986 Meloidogyne incognita Minc11986 I
nhr-97 Caenorhabditis elegans WBGene00003687 N
PTRK_0000785300 Parastrongyloides trichosuri PTRK_0000785300 I
RSKR_0000862400 Rhabditophanes kr3021 RSKR_0000862400 N
SMUV_0001018601 Syphacia muris SMUV_0001018601 N
SPAL_0001690000 Strongyloides papillosus SPAL_0001690000 I
SSTP_0000433200 Strongyloides stercoralis SSTP_0000433200 I
SVE_0662100 Strongyloides venezuelensis SVE_0662100 I
TCNE_0000088101 Toxocara canis TCNE_0000088101 N