ONIVA03G28660 (Oryza nivara)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ONIVA03G28660 T331646_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.731 0.909
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.706 0.932
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.706 0.932
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.654 0.659
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.654 0.659
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.602 0.773
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ONIVA03G28660.1 Sox 185 228
ONIVA03G28660.2 Sox 185 228
ONIVA03G28660.3 Sox 113 156

Links

Other Sox family TFs
Other Oryza nivara TFs

533 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL008337 Aedes aegypti AAEL008337 I 0.000
AALB000416 Anopheles albimanus AALB000416 I 0.000
Aan_R001146 Calypte anna Aan_R001146 I 0.000
AARA011014 Anopheles arabiensis AARA011014 I 0.000
AATE013317 Anopheles atroparvus AATE013317 I 0.000
ACOM023916 Anopheles coluzzii ACOM023916 I 0.000
ACUA008697 Anopheles culicifacies ACUA008697 I 0.000
ACYPI008613 Acyrthosiphon pisum ACYPI008613 I 0.000
ADAC004417 Anopheles darlingi ADAC004417 I 0.000
ADIR010890 Anopheles dirus ADIR010890 I 0.000
AEPI001842 Anopheles epiroticus AEPI001842 I 0.000
AFAF008895 Anopheles farauti AFAF008895 I 0.000
AFUN010568 Anopheles funestus AFUN010568 I 0.000
AGAP008563 Anopheles gambiae AGAP008563 I 0.000
AGAP008567 Anopheles gambiae AGAP008567 I 0.000
AGAP008569 Anopheles gambiae AGAP008569 I 0.000
Alligator_sinensis_CCG015231.1 Alligator sinensis Alligator_sinensis_CCG015231.1 I 0.000
AMAM010638 Anopheles maculatus AMAM010638 I 0.000
AMEC012505 Anopheles melas AMEC012505 I 0.000
AMEC014683 Anopheles melas AMEC014683 I 0.000
AMEM005379 Anopheles merus AMEM005379 I 0.000
AMIN000992 Anopheles minimus AMIN000992 I 0.000
AQUA000256 Anopheles quadriannulatus AQUA000256 I 0.000
ASTEI05184 Anopheles stephensi ASTEI05184 I 0.000
ASTEI05186 Anopheles stephensi ASTEI05186 I 0.000
CGI_10020437 Crassostrea gigas CGI_10020437 I 0.000
Cmyd_10006683 Chelonia mydas Cmyd_10006683 I 0.000
Cmyd_10014386 Chelonia mydas Cmyd_10014386 I 0.000
csin100383 Clonorchis sinensis csin100383 I 0.000
D915_09218 Fasciola hepatica D915_09218 I 0.000
D917_05246 Trichinella nativa D917_05246 I 0.000
DAPPUDRAFT_59354 Daphnia pulex DAPPUDRAFT_59354 I 0.000
DAPPUDRAFT_59366 Daphnia pulex DAPPUDRAFT_59366 I 0.000
ECANG7_07504 Echinococcus canadensis ECANG7_07504 I 0.000
EFV54310 Trichinella spiralis EFV54310 I 0.000
EmuJ_000377200 Echinococcus multilocularis EmuJ_000377200 I 0.000
ENSAMEG00000015853 Ailuropoda melanoleuca ENSAMEG00000015853 I 0.000
ENSAMXG00000002328 Astyanax mexicanus ENSAMXG00000002328 I 0.000
ENSCSAG00000014936 Chlorocebus sabaeus ENSCSAG00000014936 I 0.000
ENSCSAG00000017375 Chlorocebus sabaeus ENSCSAG00000017375 I 0.000
ENSFALG00000002727 Ficedula albicollis ENSFALG00000002727 I 0.000
ENSFALG00000002783 Ficedula albicollis ENSFALG00000002783 I 0.000
ENSGALG00000012151 Gallus gallus ENSGALG00000012151 I 0.000
ENSGALG00000015834 Gallus gallus ENSGALG00000015834 I 0.000
ENSGMOG00000012734 Gadus morhua ENSGMOG00000012734 I 0.000
ENSLACG00000010741 Latimeria chalumnae ENSLACG00000010741 I 0.000
ENSLOCG00000002483 Lepisosteus oculatus ENSLOCG00000002483 I 0.000
ENSMPUG00000005346 Mustela putorius furo ENSMPUG00000005346 I 0.000
ENSMPUG00000007865 Mustela putorius furo ENSMPUG00000007865 I 0.000
ENSNLEG00000001606 Nomascus leucogenys ENSNLEG00000001606 I 0.000
ENSNLEG00000012797 Nomascus leucogenys ENSNLEG00000012797 I 0.000
ENSOANG00000006968 Ornithorhynchus anatinus ENSOANG00000006968 I 0.000
ENSOARG00000005153 Ovis aries ENSOARG00000005153 I 0.000
ENSOARG00000013317 Ovis aries ENSOARG00000013317 I 0.000
ENSONIG00000006593 Oreochromis niloticus ENSONIG00000006593 I 0.000
ENSP00000358677 Macaca fascicularis ENSP00000358677 I 0.000
ENSP00000358677-D1 Bos grunniens ENSP00000358677-D1 I 0.000
ENSP00000386170 Macaca fascicularis ENSP00000386170 I 0.000
ENSP00000386170-D1 Bos grunniens ENSP00000386170-D1 I 0.000
ENSPANG00000007074 Papio anubis ENSPANG00000007074 I 0.000
ENSPFOG00000012859 Poecilia formosa ENSPFOG00000012859 I 0.000
ENSPPYG00000016815 Pongo abelii ENSPPYG00000016815 I 0.000
ENSPPYG00000017641 Pongo abelii ENSPPYG00000017641 I 0.000
ENSPSIG00000013362 Pelodiscus sinensis ENSPSIG00000013362 I 0.000
ENSPSIG00000016149 Pelodiscus sinensis ENSPSIG00000016149 I 0.000
ENSSHAG00000010820 Sarcophilus harrisii ENSSHAG00000010820 I 0.000
ENSSHAG00000016356 Sarcophilus harrisii ENSSHAG00000016356 I 0.000
ENSSTOG00000020544 Ictidomys tridecemlineatus ENSSTOG00000020544 I 0.000
ENSXMAG00000004704 Xiphophorus maculatus ENSXMAG00000004704 I 0.000
e_gw.90.81.1 Branchiostoma floridae e_gw.90.81.1 I 0.000
GA19742 Drosophila pseudoobscura FBgn0079738 I 0.000
GA25466 Drosophila pseudoobscura FBgn0246844 I 0.000
GB45715 Apis mellifera GB45715 I 0.000
GD23340 Drosophila simulans FBgn0194726 I 0.000
GD23341 Drosophila simulans FBgn0194727 I 0.000
GE25406 Drosophila yakuba FBgn0242479 I 0.000
GE25417 Drosophila yakuba FBgn0242487 I 0.000
GF14390 Drosophila ananassae FBgn0091417 I 0.000
GF14392 Drosophila ananassae FBgn0091419 I 0.000
Gfo_R005492 Geospiza fortis Gfo_R005492 I 0.000
GG25071 Drosophila erecta FBgn0117200 I 0.000
GG25073 Drosophila erecta FBgn0117202 I 0.000
GI17986 Drosophila mojavensis FBgn0140726 I 0.000
GJ19565 Drosophila virilis FBgn0206707 I 0.000
GJ19568 Drosophila virilis FBgn0206710 I 0.000
GK15084 Drosophila willistoni FBgn0217089 I 0.000
GK15086 Drosophila willistoni FBgn0217091 I 0.000
GL25841 Drosophila persimilis FBgn0163425 I 0.000
GL25845 Drosophila persimilis FBgn0163429 I 0.000
GM18547 Drosophila sechellia FBgn0173454 I 0.000
GM18548 Drosophila sechellia FBgn0173455 I 0.000
H15 Drosophila melanogaster FBgn0016660 I 0.000
HCOI01255700 Haemonchus contortus HCOI01255700 I 0.000
HDID_0000627201 Hymenolepis diminuta HDID_0000627201 I 0.000
HelroG134299 Helobdella robusta HelroG134299 I 0.000
HelroG98030 Helobdella robusta HelroG98030 I 0.000
HMEL012426 Heliconius melpomene HMEL012426 I 0.000
HmN_000695600 Hymenolepis microstoma HmN_000695600 I 0.000
HNAJ_0000047101 Hymenolepis nana HNAJ_0000047101 I 0.000
L798_07505 Zootermopsis nevadensis L798_07505 I 0.000
L898_g31228 Steinernema monticolum L898_g31228 N 0.000
LCUP000433 Lucilia cuprina LCUP000433 I 0.000
LotgiG129083 Lottia gigantea LotgiG129083 I 0.000
LotgiG179359 Lottia gigantea LotgiG179359 I 0.000
MCOS_0000012101 Mesocestoides corti MCOS_0000012101 I 0.000
MDOA009961 Musca domestica MDOA009961 I 0.000
MDOA010319 Musca domestica MDOA010319 I 0.000
mid Drosophila melanogaster FBgn0261963 D 0.000
Myotis_brandtii_TBX18_10024963 Myotis brandtii Myotis_brandtii_TBX18_10024963 I 0.000
Myotis_brandtii_Tbx20_10020109 Myotis brandtii Myotis_brandtii_Tbx20_10020109 I 0.000
NEMVEDRAFT_v1g106123 Nematostella vectensis NEMVEDRAFT_v1g106123 I 0.000
NEMVEDRAFT_v1g117456 Nematostella vectensis NEMVEDRAFT_v1g117456 I 0.000
NV17864 Nasonia vitripennis NV17864 I 0.000
NV17866 Nasonia vitripennis NV17866 I 0.000
Ocbimv22004458m.g Octopus bimaculoides Ocbimv22004458m.g I 0.000
Ogr10944 Ophisaurus gracilis Ogr10944 I 0.000
Ogr18070 Ophisaurus gracilis Ogr18070 I 0.000
PTRK_0000394000 Parastrongyloides trichosuri PTRK_0000394000 N 0.000
Pvit_04171 Pogona vitticeps Pvit_04171 I 0.000
Pvit_09354 Pogona vitticeps Pvit_09354 I 0.000
Sakowv30029504m.g Saccoglossus kowalevskii Sakowv30029504m.g I 0.000
Sjc_0040480 Schistosoma japonicum Sjc_0040480 I 0.000
SMAR008438 Strigamia maritima SMAR008438 I 0.000
SMAR015389 Strigamia maritima SMAR015389 I 0.000
Smp_003900 Schistosoma mansoni Smp_003900 I 0.000
SMU15033270 Schmidtea mediterranea SMU15033270 I 0.000
SPAL_0000556200 Strongyloides papillosus SPAL_0000556200 N 0.000
SSTP_0001033100 Strongyloides stercoralis SSTP_0001033100 N 0.000
T265_12717 Opisthorchis viverrini T265_12717 I 0.000
TASK_0000456901 Taenia asiatica TASK_0000456901 I 0.000
TBX18 Anolis carolinensis ENSACAG00000003859 I 0.000
TBX18 Bos taurus ENSBTAG00000018161 I 0.000
TBX18 Canis familiaris ENSCAFG00000002987 I 0.000
TBX18 Callithrix jacchus ENSCJAG00000015218 I 0.000
TBX18 Dasypus novemcinctus ENSDNOG00000049259 I 0.000
TBX18 Equus caballus ENSECAG00000005787 I 0.000
TBX18 Erinaceus europaeus ENSEEUG00000013766 I 0.000
TBX18 Echinops telfairi ENSETEG00000006457 I 0.000
TBX18 Felis catus ENSFCAG00000012657 I 0.000
TBX18 Homo sapiens ENSG00000112837 D 0.000
TBX18 Gorilla gorilla ENSGGOG00000027982 I 0.000
TBX18 Loxodonta africana ENSLAFG00000015009 I 0.000
TBX18 Myotis lucifugus ENSMLUG00000011326 I 0.000
TBX18 Macaca mulatta ENSMMUG00000010599 I 0.000
TBX18 Monodelphis domestica ENSMODG00000018361 I 0.000
Tbx18 Mus musculus ENSMUSG00000032419 I 0.000
TBX18 Oryctolagus cuniculus ENSOCUG00000002026 I 0.000
TBX18 Otolemur garnettii ENSOGAG00000004300 I 0.000
TBX18 Pan troglodytes ENSPTRG00000018390 I 0.000
TBX18 Pteropus vampyrus ENSPVAG00000016771 I 0.000
Tbx18 Rattus norvegicus ENSRNOG00000010685 I 0.000
TBX18 Sus scrofa ENSSSCG00000004290 I 0.000
TBX18 Tupaia belangeri ENSTBEG00000007925 I 0.000
TBX18 Taeniopygia guttata ENSTGUG00000012504 I 0.000
TBX18 Tursiops truncatus ENSTTRG00000005713 I 0.000
TBX18 Vicugna pacos ENSVPAG00000006869 I 0.000
tbx18 Xenopus tropicalis XB-GENE-489907 I 0.000
TBX20 Anolis carolinensis ENSACAG00000007473 I 0.000
TBX20 Bos taurus ENSBTAG00000017541 I 0.000
TBX20 Canis familiaris ENSCAFG00000028536 I 0.000
tbx20 Ciona intestinalis ENSCING00000005267 I 0.000
TBX20 Callithrix jacchus ENSCJAG00000012232 I 0.000
TBX20 Cavia porcellus ENSCPOG00000015229 I 0.000
tbx20 Danio rerio ENSDARG00000005150 I 0.000
TBX20 Dasypus novemcinctus ENSDNOG00000004142 I 0.000
TBX20 Equus caballus ENSECAG00000018182 I 0.000
TBX20 Erinaceus europaeus ENSEEUG00000010135 I 0.000
TBX20 Echinops telfairi ENSETEG00000012771 I 0.000
TBX20 Felis catus ENSFCAG00000013004 I 0.000
TBX20 Homo sapiens ENSG00000164532 D 0.000
tbx20 Gasterosteus aculeatus ENSGACG00000012706 I 0.000
TBX20 Gorilla gorilla ENSGGOG00000026618 I 0.000
TBX20 Loxodonta africana ENSLAFG00000012790 I 0.000
TBX20 Meleagris gallopavo ENSMGAG00000012040 I 0.000
TBX20 Myotis lucifugus ENSMLUG00000015517 I 0.000
TBX20 Macaca mulatta ENSMMUG00000012549 I 0.000
TBX20 Monodelphis domestica ENSMODG00000000085 I 0.000
Tbx20 Mus musculus ENSMUSG00000031965 D 0.000
TBX20 Oryctolagus cuniculus ENSOCUG00000007422 I 0.000
TBX20 Otolemur garnettii ENSOGAG00000010338 I 0.000
TBX20 Ochotona princeps ENSOPRG00000013626 I 0.000
TBX20 Pan troglodytes ENSPTRG00000019076 I 0.000
Tbx20 Rattus norvegicus ENSRNOG00000016181 I 0.000
TBX20 Sus scrofa ENSSSCG00000016662 I 0.000
TBX20 Taeniopygia guttata ENSTGUG00000005375 I 0.000
tbx20 Tetraodon nigroviridis ENSTNIG00000005154 I 0.000
tbx20 Takifugu rubripes ENSTRUG00000005667 I 0.000
TBX20 Tursiops truncatus ENSTTRG00000016622 I 0.000
tbx20 Xenopus tropicalis XB-GENE-487334 I 0.000
tbx20.L Xenopus laevis XB-GENE-865696 I 0.000
TC014296 Tribolium castaneum TC014296 I 0.000
tetur32g01390 Tetranychus urticae tetur32g01390 I 0.000
tetur32g01430 Tetranychus urticae tetur32g01430 I 0.000
TMUE_s0080002600 Trichuris muris TMUE_s0080002600 I 0.000
TTRE_0000323501 Trichuris trichiura TTRE_0000323501 I 0.000