ACOC_0000950001 (Angiostrongylus costaricensis)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 ACOC_0000950001 T343396_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.838 0.838
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.838 0.838
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.838 0.838
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.838 0.838
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.838 0.838
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.838 0.838
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.838 0.838
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.838 0.838
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.838 0.838
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.838 0.838
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.749 0.749
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.749 0.749
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.749 0.749
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ACOC_0000950001-mRNA-1 TBP 159 241
ACOC_0000950001-mRNA-1 TBP 249 332

Links

Other TBP family TFs
Other Angiostrongylus costaricensis TFs

735 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29843.m000288 Ricinus communis 29843.m000288 N
Aquca_018_00160 Aquilegia coerulea Aquca_018_00160 N
Bo8g030620 Brassica oleracea Bo8g030620 N
Bostr.29044s0085 Boechera stricta Bostr.29044s0085 N
Bra038936 Brassica rapa Bra038936 N
BRADI4G34050 Brachypodium distachyon BRADI4G34050 N
Cagra.2178s0009 Capsella grandiflora Cagra.2178s0009 N
Carubv10005368m.g Capsella rubella Carubv10005368m.g N
cassava11725.valid.m1 Manihot esculenta cassava11725.valid.m1 N
Ca_15552 Cicer arietinum Ca_15552 N
Ca_15553 Cicer arietinum Ca_15553 N
Ciclev10008843m.g Citrus clementina Ciclev10008843m.g N
Eucgr.C00067 Eucalyptus grandis Eucgr.C00067 N
evm.TU.supercontig_115.32 Carica papaya evm.TU.supercontig_115.32 N
GSMUA_Achr9G14080_001 Musa acuminata GSMUA_Achr9G14080_001 N
Lus10017146.g Linum usitatissimum Lus10017146.g N
MBD02 Vitis vinifera VIT_11s0065g01010 N
MBD02 Arabidopsis lyrata scaffold_703403.1 N
MBD2 Arabidopsis thaliana AT5G35330 N
mgf002635m Mimulus guttatus mgf002635m N
orange1.1g019505m.g Citrus sinensis orange1.1g019505m.g N
PGSC0003DMG400013699 Solanum tuberosum PGSC0003DMG400013699 N
Pm008965 Prunus mume Pm008965 N
POPTR_0006s07730 Populus trichocarpa POPTR_0006s07730 N
PRUPE_ppa008652mg Prunus persica PRUPE_ppa008652mg N
SapurV1A.0001s2550 Salix purpurea SapurV1A.0001s2550 N
Solyc05g047450.1 Solanum lycopersicum Solyc05g047450.1 N
TCM_039691 Theobroma cacao TCM_039691 N
Thhalv10003457m.g Eutrema salsugineum Thhalv10003457m.g N