cassava6754.valid.m1 (Manihot esculenta)
TCR/CxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03638 (TCR) IPR005172 cassava6754.valid.m1 T345952_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
gw1.20.00.89.1
M02535_2.00 		Ostreococcus tauri
WNYWBVWRNW
WNYWBVWRNW		 PBM
Weirauch et al.(2014)
pTH9647 		0.672 0.225
AT2G20110
M02520_2.00 		Arabidopsis thaliana
DTTTAAAH
DTTTAAAH		 PBM
Weirauch et al.(2014)
pTH7914 		0.672 0.200
TCX5
M02523_2.00 		Arabidopsis thaliana
NRTTCAAAYN
NRTTTGAAYN		 PBM
Weirauch et al.(2014)
pTH8164 		0.672 0.200
BGIBMGA008956
M02524_2.00 		Bombyx mori
AATTTAAAW
WTTTAAATT		 PBM
Weirauch et al.(2014)
pTH9238 		0.672 0.200
GE12548
M02529_2.00 		Drosophila yakuba
DTTYAAAY
RTTTRAAH		 PBM
Weirauch et al.(2014)
pTH9262 		0.672 0.200
NEMVEDRAFT_v1g111410
M01320_2.00 		Nematostella vectensis
NNNNYRWRN
NYWYRNNNN		 PBM
Lambert et al.(2019)
pTH9771 		0.672 0.200
SPU_025306
M02531_2.00 		Strongylocentrotus purpuratus
NNNNWYRAAH
DTTYRWNNNN		 PBM
Weirauch et al.(2014)
pTH9286 		0.672 0.200
XP_002124866.1
M01321_2.00 		Ciona intestinalis
NDTTYRAAN
NTTYRAAHN		 PBM
Lambert et al.(2019)
pTH9835 		0.672 0.200
fgenesh1_pg.C_Chr_09.0001000301
M02533_2.00 		Ostreococcus tauri
NNNNNRHNN
NNDYNNNNN		 PBM
Weirauch et al.(2014)
pTH9457 		0.672 0.200
fgeneshCV_pg.C_scaffold_18000164
M02534_2.00 		Chlorella vulgaris
NNNNDYRAAH
DTTYRHNNNN		 PBM
Weirauch et al.(2014)
pTH9252 		0.672 0.200
AT2G20110
M07295_2.00 		Arabidopsis thaliana
WWHWAADATTYAAAW
WTTTRAATHTTWDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_col_a 		0.672 0.200
AT2G20110
M07296_2.00 		Arabidopsis thaliana
WWHNAAATTYAAAHN
NDTTTRAATTTNDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_colamp_a 		0.672 0.200
ENSTSYG00000005291
M02528_2.00 		Tarsius syrichta
NNWDHDHWNN
NNWDHDHWNN		 PBM
Weirauch et al.(2014)
pTH9366 		0.672 0.189
PK27683.1
M01322_2.00 		Cannabis sativa
NDTTYAAAH
DTTTRAAHN		 PBM
Lambert et al.(2019)
pTH11347 		0.672 0.189
AT5G25790
M01319_2.00 		Arabidopsis thaliana
NHYRAAHN
NDTTYRDN		 PBM
Lambert et al.(2019)
pTH11533 		0.672 0.187
lin54
M02526_2.00 		Danio rerio
NHTYRAAH
DTTYRADN		 PBM
Weirauch et al.(2014)
pTH8399 		0.672 0.187
LIN54
M02527_2.00 		Gallus gallus
NRTTYAAAH
DTTTRAAYN		 PBM
Weirauch et al.(2014)
pTH8566 		0.672 0.187
GSPATT00010696001
M02530_2.00 		Paramecium tetraurelia
NNBRAAHN
NDTTYVNN		 PBM
Weirauch et al.(2014)
pTH8720 		0.672 0.187
TSO1
M07299_2.00 		Arabidopsis thaliana
WWWTWDAAATTYAAA
TTTRAATTTHWAWWW		 Dap-seq
OMalley et al.(2016)
TSO1_col_a 		0.672 0.187
TCX4
M02521_2.00 		Arabidopsis thaliana
DWTTYRAAWH
DWTTYRAAWH		 PBM
Weirauch et al.(2014)
pTH7573 		0.672 0.184
TCX3
M01087_2.00 		Arabidopsis thaliana
NNDTTYAAAH
DTTTRAAHNN		 PBM
Sullivan et al.(2014)
pTH7218 		0.672 0.184
TCX3
M02522_2.00 		Arabidopsis thaliana
WTTYAAAH
DTTTRAAW		 PBM
Weirauch et al.(2014)
pTH7421 		0.672 0.184
BRADI1G55710
M02525_2.00 		Brachypodium distachyon
NVTBYRVABN
NVTBYRVABN		 PBM
Weirauch et al.(2014)
pTH9241 		0.672 0.184
PK22848.1
M02532_2.00 		Cannabis sativa
NNNYNAAATTTNN
NNAAATTTNRNNN		 PBM
Weirauch et al.(2014)
pTH9724 		0.672 0.184
TCX3
M07297_2.00 		Arabidopsis thaliana
DWTTYRAAWTTBAAW
WTTVAAATTYRAAWH		 Dap-seq
OMalley et al.(2016)
SOL1_colamp_a 		0.672 0.184
TCX3
M07298_2.00 		Arabidopsis thaliana
WTWWAAAATTYAAAW
WTTTRAATTTTWWAW		 Dap-seq
OMalley et al.(2016)
SOL1_col 		0.672 0.184
TCX2
M07300_2.00 		Arabidopsis thaliana
WWTYVAAATTYRAAW
WTTYRAATTTBRAWW		 Dap-seq
OMalley et al.(2016)
TCX2_col_a 		0.672 0.184
TCX2
M07301_2.00 		Arabidopsis thaliana
TTYVAAATTYRAAW
WTTYRAATTTBRAA		 Dap-seq
OMalley et al.(2016)
TCX2_colamp_a 		0.672 0.184
For this family, TFs with SR scores > 0.660 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava6754.valid.m1 TCR/CxC 657 693

Links

Other TCR/CxC family TFs
Other Manihot esculenta TFs

1213 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL014322 Aedes aegypti AAEL014322 I
AALB008334 Anopheles albimanus AALB008334 I
AARA002094 Anopheles arabiensis AARA002094 I
AATE018889 Anopheles atroparvus AATE018889 I
ACHR010174 Anopheles christyi ACHR010174 I
ACOM034431 Anopheles coluzzii ACOM034431 I
ACUA006973 Anopheles culicifacies ACUA006973 I
ADAC002492 Anopheles darlingi ADAC002492 I
ADIR010448 Anopheles dirus ADIR010448 I
AEPI006062 Anopheles epiroticus AEPI006062 I
AFAF001067 Anopheles farauti AFAF001067 I
AFUN011634 Anopheles funestus AFUN011634 I
AMAM006832 Anopheles maculatus AMAM006832 I
AMEM001613 Anopheles merus AMEM001613 I
AMIN003460 Anopheles minimus AMIN003460 I
AQUA000514 Anopheles quadriannulatus AQUA000514 I
ASTEI05690 Anopheles stephensi ASTEI05690 I
A_07871 Schistosoma haematobium A_07871 I
CapteG36721 Capitella teleta CapteG36721 I
Cflo_03885--XP_001120527.1_APIME Camponotus floridanus Cflo_03885--XP_001120527.1_APIME I
CGI_10007380 Crassostrea gigas CGI_10007380 I
CLEC002330 Cimex lectularius CLEC002330 I
CPIJ005345 Culex quinquefasciatus CPIJ005345 I
CpipJ_CPIJ005345 Culex pipiens CpipJ_CPIJ005345 I
csin100742 Clonorchis sinensis csin100742 I
D915_09890 Fasciola hepatica D915_09890 I
D917_06339 Trichinella nativa D917_06339 I
D918_04086 Trichuris suis D918_04086 I
ECANG7_02004 Echinococcus canadensis ECANG7_02004 I
ECPE_0001678601 Echinostoma caproni ECPE_0001678601 I
EFV52759 Trichinella spiralis EFV52759 I
EmuJ_001053100 Echinococcus multilocularis EmuJ_001053100 I
ENSAMEG00000018197 Ailuropoda melanoleuca ENSAMEG00000018197 I
ENSBTAP00000002868-D1 Bos grunniens ENSBTAP00000002868-D1 I
ENSCSAG00000004934 Chlorocebus sabaeus ENSCSAG00000004934 I
ENSGMOG00000016963 Gadus morhua ENSGMOG00000016963 I
ENSMEUG00000014270 Macropus eugenii ENSMEUG00000014270 I
ENSMPUG00000013563 Mustela putorius furo ENSMPUG00000013563 I
ENSOARG00000025174 Ovis aries ENSOARG00000025174 I
ENSONIG00000007897 Oreochromis niloticus ENSONIG00000007897 I
ENSPANG00000011946 Papio anubis ENSPANG00000011946 I
ENSPFOG00000009843 Poecilia formosa ENSPFOG00000009843 I
ENSPPYG00000003449 Pongo abelii ENSPPYG00000003449 I
ENSSARG00000002401 Sorex araneus ENSSARG00000002401 I
ENSSHAG00000017220 Sarcophilus harrisii ENSSHAG00000017220 I
ENSSTOG00000011556 Ictidomys tridecemlineatus ENSSTOG00000011556 I
ENSXMAG00000009780 Xiphophorus maculatus ENSXMAG00000009780 I
fgenesh2_pg.scaffold_226000031 Branchiostoma floridae fgenesh2_pg.scaffold_226000031 I
fgenesh2_pg.scaffold_226000032 Branchiostoma floridae fgenesh2_pg.scaffold_226000032 I
fgenesh2_pg.scaffold_29000123 Branchiostoma floridae fgenesh2_pg.scaffold_29000123 I
GA10192 Drosophila pseudoobscura FBgn0070251 I
GB55306 Apis mellifera GB55306 I
GD18361 Drosophila simulans FBgn0189889 I
GE23932 Drosophila yakuba FBgn0241076 I
GF18746 Drosophila ananassae FBgn0095763 I
GG12413 Drosophila erecta FBgn0104701 I
GH13904 Drosophila grimshawi FBgn0121380 I
GJ24474 Drosophila virilis FBgn0211554 I
GK22777 Drosophila willistoni FBgn0224749 I
GL13832 Drosophila persimilis FBgn0151437 I
GM23547 Drosophila sechellia FBgn0178413 I
HmN_000553800 Hymenolepis microstoma HmN_000553800 I
HNAJ_0001324201 Hymenolepis nana HNAJ_0001324201 I
Hsal_05065--XP_001120527.1_APIME Harpegnathos saltator Hsal_05065--XP_001120527.1_APIME I
LCUP007809 Lucilia cuprina LCUP007809 I
LDEC009949 Leptinotarsa decemlineata LDEC009949 I
LLOJ004446 Lutzomyia longipalpis LLOJ004446 I
LotgiG99982 Lottia gigantea LotgiG99982 I
MCOS_0000168001 Mesocestoides corti MCOS_0000168001 I
MYF6 Ochotona princeps ENSOPRG00000008999 I
MYOD1 Anolis carolinensis ENSACAG00000000054 I
MYOD1 Bos taurus ENSBTAG00000002216 I
MYOD1 Canis familiaris ENSCAFG00000009066 I
MYOD1 Callithrix jacchus ENSCJAG00000009258 I
MYOD1 Cavia porcellus ENSCPOG00000021351 I
MYOD1 Dasypus novemcinctus ENSDNOG00000017164 I
MYOD1 Equus caballus ENSECAG00000002132 I
MYOD1 Echinops telfairi ENSETEG00000003979 I
MYOD1 Felis catus ENSFCAG00000004973 I
MYOD1 Homo sapiens ENSG00000129152 D
MYOD1 Gorilla gorilla ENSGGOG00000008222 I
MYOD1 Loxodonta africana ENSLAFG00000018353 I
MYOD1 Microcebus murinus ENSMICG00000005566 I
MYOD1 Myotis lucifugus ENSMLUG00000007940 I
MYOD1 Macaca mulatta ENSMMUG00000006400 I
MYOD1 Monodelphis domestica ENSMODG00000006749 I
Myod1 Mus musculus ENSMUSG00000009471 D
MYOD1 Otolemur garnettii ENSOGAG00000029784 I
MYOD1 Ochotona princeps ENSOPRG00000002390 I
MYOD1 Procavia capensis ENSPCAG00000001317 I
MYOD1 Pan troglodytes ENSPTRG00000003406 I
MYOD1 Pteropus vampyrus ENSPVAG00000012829 I
Myod1 Rattus norvegicus ENSRNOG00000011306 I
MYOD1 Sus scrofa ENSSSCG00000013375 I
MYOD1 Tupaia belangeri ENSTBEG00000003438 I
MYOD1 Tursiops truncatus ENSTTRG00000013869 I
nau Drosophila melanogaster FBgn0002922 D
nRc.2.0.1.g24248 Romanomermis culicivorax nRc.2.0.1.g24248 I
NV10294 Nasonia vitripennis NV10294 I
Ocbimv22002759m.g Octopus bimaculoides Ocbimv22002759m.g I
PHUM424120 Pediculus humanus PHUM424120 I
RPRC009735 Rhodnius prolixus RPRC009735 I
Sakowv30008488m.g Saccoglossus kowalevskii Sakowv30008488m.g I
SBAD_0001285401 Soboliphyme baturini SBAD_0001285401 I
Sjc_0011830 Schistosoma japonicum Sjc_0011830 I
Smp_167400 Schistosoma mansoni Smp_167400 I
SMU15001149 Schmidtea mediterranea SMU15001149 I
SPER_0001779001 Spirometra erinaceieuropaei SPER_0001779001 I
SPER_0002215301 Spirometra erinaceieuropaei SPER_0002215301 I
SPU_021119 Strongylocentrotus purpuratus SPU_021119 I
SSLN_0000613901 Schistocephalus solidus SSLN_0000613901 I
T265_10140 Opisthorchis viverrini T265_10140 I
TASK_0000583801 Taenia asiatica TASK_0000583801 I
TC015855 Tribolium castaneum TC015855 I
TMUE_s0045001800 Trichuris muris TMUE_s0045001800 I
TRE_0000306101 Trichobilharzia regenti TRE_0000306101 I
TsM_000079400 Taenia solium TsM_000079400 I
TTRE_0000002701 Trichuris trichiura TTRE_0000002701 I
YQE_11476 Dendroctonus ponderosae YQE_11476 I