prkrirb (Gasterosteus aculeatus)
THAP finger

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF05485 (THAP) IPR006612 ENSGACG00000010435 T348360_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
prkrirb
M02540_2.00 		Oryzias latipes
NNBBCCGGNHN
NDNCCGGVVNN		 PBM
Weirauch et al.(2014)
pTH9383 		0.987 0.987
prkrirb
M02541_2.00 		Tetraodon nigroviridis
CCCGCGGG
CCCGCGGG		 PBM
Weirauch et al.(2014)
pTH8574 		0.987 0.987
prkrirb
M02536_2.00 		Danio rerio
NNMCMGMSGGNN
NNCCSKCKGKNN		 PBM
Weirauch et al.(2014)
pTH8319 		0.924 0.924
THAP12
M02538_2.00 		Homo sapiens
NNNYMBNNBGRN
NYCVNNVKRNNN		 PBM
Weirauch et al.(2014)
pTH9190 		0.848 0.848
THAP12
M02539_2.00 		Gallus gallus
NBNYCKGKMNNN
NNNKMCMGRNVN		 PBM
Weirauch et al.(2014)
pTH8688 		0.810 0.810
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000013791 THAP finger 4 88

Links

Other THAP finger family TFs
Other Gasterosteus aculeatus TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29417.m000034 Ricinus communis 29417.m000034 N
30090.m000247 Ricinus communis 30090.m000247 N
AMTR_s00032p00241350 Amborella trichopoda AMTR_s00032p00241350 N
AMTR_s00033p00166000 Amborella trichopoda AMTR_s00033p00166000 N
AMTR_s00059p00116150 Amborella trichopoda AMTR_s00059p00116150 N
Aquca_016_00081 Aquilegia coerulea Aquca_016_00081 N
Aquca_030_00325 Aquilegia coerulea Aquca_030_00325 N
AT1G31040 Arabidopsis thaliana AT1G31040 N
BGIOSGA007635 Oryza indica BGIOSGA007635 N
BGIOSGA023427 Oryza indica BGIOSGA023427 N
Bo2g121040 Brassica oleracea Bo2g121040 N
Bo7g041160 Brassica oleracea Bo7g041160 N
Bostr.15697s0409 Boechera stricta Bostr.15697s0409 N
Bra014899 Brassica rapa Bra014899 N
Bra038403 Brassica rapa Bra038403 N
BRADI1G32050 Brachypodium distachyon BRADI1G32050 N
BRADI3G05380 Brachypodium distachyon BRADI3G05380 N
Cagra.1508s0089 Capsella grandiflora Cagra.1508s0089 N
cassava11490.m1 Manihot esculenta cassava11490.m1 N
cassava41034.m1 Manihot esculenta cassava41034.m1 N
cassava446.valid.m1 Manihot esculenta cassava446.valid.m1 N
Ca_06740 Cicer arietinum Ca_06740 N
chr6.CM0037.1230.nd Lotus japonicus chr6.CM0037.1230.nd N
Ciclev10016385m.g Citrus clementina Ciclev10016385m.g N
Cla010042 Citrullus lanatus Cla010042 N
Cla019628 Citrullus lanatus Cla019628 N
Cucsa.048750 Cucumis sativus Cucsa.048750 N
Cucsa.132770 Cucumis sativus Cucsa.132770 N
Cucsa.134530 Cucumis sativus Cucsa.134530 N
Eucgr.C00450 Eucalyptus grandis Eucgr.C00450 N
Eucgr.D00032 Eucalyptus grandis Eucgr.D00032 N
Eucgr.E00457 Eucalyptus grandis Eucgr.E00457 N
Eucgr.E04309 Eucalyptus grandis Eucgr.E04309 N
evm.TU.supercontig_30.133 Carica papaya evm.TU.supercontig_30.133 N
evm.TU.supercontig_46.74 Carica papaya evm.TU.supercontig_46.74 N
F775_02274 Aegilops tauschii F775_02274 N
fgenesh1_pm.C_scaffold_1002523 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002523 N
gene19989-v1.0-hybrid Fragaria vesca gene19989-v1.0-hybrid N
GLYMA05G26271 Glycine max GLYMA05G26271 N
GLYMA08G09191 Glycine max GLYMA08G09191 N
GLYMA09G05781 Glycine max GLYMA09G05781 N
GLYMA09G12330 Glycine max GLYMA09G12330 N
GLYMA13G23360 Glycine max GLYMA13G23360 N
GLYMA15G17040 Glycine max GLYMA15G17040 N
GLYMA15G23920 Glycine max GLYMA15G23920 N
GLYMA17G11470 Glycine max GLYMA17G11470 N
Gorai.009G013500 Gossypium raimondii Gorai.009G013500 N
Gorai.010G057300 Gossypium raimondii Gorai.010G057300 N
GRMZM2G017882 Zea mays GRMZM2G017882 N
GSMUA_Achr1G09990_001 Musa acuminata GSMUA_Achr1G09990_001 N
GSMUA_Achr2G02580_001 Musa acuminata GSMUA_Achr2G02580_001 N
GSMUA_Achr6G20140_001 Musa acuminata GSMUA_Achr6G20140_001 N
GSMUA_Achr7G03600_001 Musa acuminata GSMUA_Achr7G03600_001 N
GSMUA_Achr8G33510_001 Musa acuminata GSMUA_Achr8G33510_001 N
GSMUA_Achr9G22490_001 Musa acuminata GSMUA_Achr9G22490_001 N
GSMUA_Achr9G30790_001 Musa acuminata GSMUA_Achr9G30790_001 N
GSMUA_AchrUn_randomG23740_001 Musa acuminata GSMUA_AchrUn_randomG23740_001 N
LjSGA_033751.1 Lotus japonicus LjSGA_033751.1 N
LPERR02G04770 Leersia perrieri LPERR02G04770 N
LPERR06G19930 Leersia perrieri LPERR06G19930 N
Lus10036226.g Linum usitatissimum Lus10036226.g N
Lus10038365.g Linum usitatissimum Lus10038365.g N
MDP0000197021 Malus domestica MDP0000197021 N
MDP0000639526 Malus domestica MDP0000639526 N
MDP0000891068 Malus domestica MDP0000891068 N
MLOC_21744 Hordeum vulgare MLOC_21744 N
MTR_2g036170 Medicago truncatula MTR_2g036170 N
MTR_4g094680 Medicago truncatula MTR_4g094680 N
MTR_4g116300 Medicago truncatula MTR_4g116300 N
OB02G14750 Oryza brachyantha OB02G14750 N
OBART02G05520 Oryza barthii OBART02G05520 N
OBART06G24000 Oryza barthii OBART06G24000 N
OGLUM02G05380 Oryza glumaepatula OGLUM02G05380 N
OGLUM06G25260 Oryza glumaepatula OGLUM06G25260 N
OLONG_011712 Oryza longistaminata OLONG_011712 N
OLONG_022199 Oryza longistaminata OLONG_022199 N
OMERI06G23930 Oryza meridionalis OMERI06G23930 N
ONIVA02G05860 Oryza nivara ONIVA02G05860 N
ONIVA03G43780 Oryza nivara ONIVA03G43780 N
OPUNC02G04680 Oryza punctata OPUNC02G04680 N
OPUNC06G21750 Oryza punctata OPUNC06G21750 N
orange1.1g048158m.g Citrus sinensis orange1.1g048158m.g N
ORGLA06G0201700 Oryza glaberrima ORGLA06G0201700 N
ORUFI02G05620 Oryza rufipogon ORUFI02G05620 N
OS02G0172800 Oryza sativa OS02G0172800 N
OS06G0666100 Oryza sativa OS06G0666100 N
Pavir.Aa03378 Panicum virgatum Pavir.Aa03378 N
Pavir.Ab00578 Panicum virgatum Pavir.Ab00578 N
Pavir.Ab00641 Panicum virgatum Pavir.Ab00641 N
Pavir.Da00255 Panicum virgatum Pavir.Da00255 N
Pavir.Db00476 Panicum virgatum Pavir.Db00476 N
Pavir.J35161 Panicum virgatum Pavir.J35161 N
PDK_20s1316692g001 Phoenix dactylifera PDK_20s1316692g001 N
PDK_20s1530701g001 Phoenix dactylifera PDK_20s1530701g001 N
PK04104.1 Cannabis sativa PK04104.1 N
PK19037.1 Cannabis sativa PK19037.1 N
Pm010795 Prunus mume Pm010795 N
Pm027672 Prunus mume Pm027672 N
POPTR_0001s15920 Populus trichocarpa POPTR_0001s15920 N
POPTR_0003s07310 Populus trichocarpa POPTR_0003s07310 N
POPTR_0006s05950 Populus trichocarpa POPTR_0006s05950 N
POPTR_0018s12380 Populus trichocarpa POPTR_0018s12380 N
PRUPE_ppa024886mg Prunus persica PRUPE_ppa024886mg N
SapurV1A.0104s0310 Salix purpurea SapurV1A.0104s0310 N
SapurV1A.0210s0200 Salix purpurea SapurV1A.0210s0200 N
SapurV1A.0306s0210 Salix purpurea SapurV1A.0306s0210 N
SapurV1A.2696s0020 Salix purpurea SapurV1A.2696s0020 N
Sb04g004830 Sorghum bicolor Sb04g004830 N
Sb10g026620 Sorghum bicolor Sb10g026620 N
Si007394m.g Setaria italica Si007394m.g N
Si018139m.g Setaria italica Si018139m.g N
Solyc02g068510.1 Solanum lycopersicum Solyc02g068510.1 N
Solyc07g007320.1 Solanum lycopersicum Solyc07g007320.1 N
TCM_006017 Theobroma cacao TCM_006017 N
TCM_038233 Theobroma cacao TCM_038233 N
Thhalv10009789m.g Eutrema salsugineum Thhalv10009789m.g N
Thhalv10022828m.g Eutrema salsugineum Thhalv10022828m.g N
Traes_6BS_4DA724E79 Triticum aestivum Traes_6BS_4DA724E79 N
Traes_6DS_CA4C01DEF Triticum aestivum Traes_6DS_CA4C01DEF N
Traes_7AL_5E9E6A334 Triticum aestivum Traes_7AL_5E9E6A334 N
Traes_7DL_B446D4CC6 Triticum aestivum Traes_7DL_B446D4CC6 N
TRIUR3_32978 Triticum urartu TRIUR3_32978 N
TRIUR3_33737 Triticum urartu TRIUR3_33737 N
VIT_01s0011g01410 Vitis vinifera VIT_01s0011g01410 N
VIT_11s0118g00600 Vitis vinifera VIT_11s0118g00600 N