CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0014s06750
(
Populus trichocarpa
)
WRC
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF08879 (WRC)
IPR014977
POPTR_0014s06750
T351206_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GRF9
M07370_2.00
Arabidopsis thaliana
NTGTCAGANNHNNVH
DBNNDNNTCTGACAN
Dap-seq
OMalley et al.(2016)
GRF9_col_a
0.706
0.706
GRF9
M07371_2.00
Arabidopsis thaliana
TGTCAGAN
NTCTGACA
Dap-seq
OMalley et al.(2016)
GRF9_colamp_a
0.706
0.706
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0014s06750.1
WRC
110
152
PEPGRCRRTDGKKWRCSKDVVAGQKYCERHMHRGRQRSRKLVE
POPTR_0014s06750.1
WRC
337
378
LELGRCRRTDGKKWRCRRDVVANQKYCEMHMHRGSKQHLEAS
Links
Other
WRC
family TFs
Other
Populus trichocarpa
TFs
26 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
30174.m008910
Ricinus communis
30174.m008910
N
0.788
AtGRF9
Vitis vinifera
VIT_15s0048g01740
I
0.812
Bo4g195580
Brassica oleracea
Bo4g195580
I
0.721
Bostr.25993s0227
Boechera stricta
Bostr.25993s0227
I
0.706
Bra039334
Brassica rapa
Bra039334
I
0.729
Cagra.0698s0014
Capsella grandiflora
Cagra.0698s0014
I
0.718
Carubv10023501m.g
Capsella rubella
Carubv10023501m.g
I
0.718
cassava28657.m1
Manihot esculenta
cassava28657.m1
I
0.788
cassava36905.valid.m1
Manihot esculenta
cassava36905.valid.m1
N
0.791
Ca_19588
Cicer arietinum
Ca_19588
I
0.706
Cla021612
Citrullus lanatus
Cla021612
N
0.814
Cucsa.257800
Cucumis sativus
Cucsa.257800
N
0.802
gene19384-v1.0-hybrid
Fragaria vesca
gene19384-v1.0-hybrid
N
0.721
GLYMA01G34650
Glycine max
GLYMA01G34650
N
0.706
GLYMA03G02500
Glycine max
GLYMA03G02500
N
0.706
Gorai.007G092400
Gossypium raimondii
Gorai.007G092400
N
0.741
GRF9
Arabidopsis thaliana
AT2G45480
D
0.706
MDP0000204597
Malus domestica
MDP0000204597
N
0.756
MTR_8g035910
Medicago truncatula
MTR_8g035910
N
0.718
PK07653.1
Cannabis sativa
PK07653.1
I
0.800
Pm017948
Prunus mume
Pm017948
N
0.741
PRUPE_ppa021277mg
Prunus persica
PRUPE_ppa021277mg
N
0.741
SapurV1A.0532s0070
Salix purpurea
SapurV1A.0532s0070
N
0.976
Solyc01g091540.1
Solanum lycopersicum
Solyc01g091540.1
N
0.702
TCM_005483
Theobroma cacao
TCM_005483
I
0.788
Thhalv10001460m.g
Eutrema salsugineum
Thhalv10001460m.g
I
0.706