Carubv10023501m.g (Capsella rubella)
WRC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF08879 (WRC) IPR014977 Carubv10023501m.g T351575_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GRF9
M07370_2.00 		Arabidopsis thaliana
NTGTCAGANNHNNVH
DBNNDNNTCTGACAN		 Dap-seq
OMalley et al.(2016)
GRF9_col_a 		0.976 0.976
GRF9
M07371_2.00 		Arabidopsis thaliana
TGTCAGAN
NTCTGACA		 Dap-seq
OMalley et al.(2016)
GRF9_colamp_a 		0.976 0.976
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10023501m WRC 14 56
Carubv10023501m WRC 238 279

Links

Other WRC family TFs
Other Capsella rubella TFs

17 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AtGRF9 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4002259 I 0.953
AtGRF9 Vitis vinifera VIT_15s0048g01740 I 0.759
Bo4g195580 Brassica oleracea Bo4g195580 I 0.884
Bostr.25993s0227 Boechera stricta Bostr.25993s0227 I 0.965
Bra039334 Brassica rapa Bra039334 I 0.872
Cagra.0698s0014 Capsella grandiflora Cagra.0698s0014 I 1.000
cassava28657.m1 Manihot esculenta cassava28657.m1 I 0.718
Ca_19588 Cicer arietinum Ca_19588 I 0.721
Cla021612 Citrullus lanatus Cla021612 N 0.709
Cucsa.257800 Cucumis sativus Cucsa.257800 N 0.709
Gorai.007G092400 Gossypium raimondii Gorai.007G092400 N 0.706
GRF9 Arabidopsis thaliana AT2G45480 D 0.976
PK07653.1 Cannabis sativa PK07653.1 I 0.744
POPTR_0014s06750 Populus trichocarpa POPTR_0014s06750 I 0.718
SapurV1A.0532s0070 Salix purpurea SapurV1A.0532s0070 N 0.706
TCM_005483 Theobroma cacao TCM_005483 I 0.729
Thhalv10001460m.g Eutrema salsugineum Thhalv10001460m.g I 0.941