vad-5 (Neurospora crassa)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00172 (Zn_clus) IPR001138 NCU06799 T390625_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
vad-5
M02619_2.00		 Neurospora crassa
NNNHCGDNNN
NNNHCGDNNN		 PBM
Weirauch et al.(2014)
pTH8350		 (Direct) (Direct)
vad-5
M02620_2.00		 Neurospora crassa
NNYCGGNWN
NWNCCGRNN		 PBM
Weirauch et al.(2014)
pTH8902		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.537 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02619_2.00 Zinc cluster 44 83
M02620_2.00 Zinc cluster 52 91

DNA Binding Domains

Protein ID Domain From To Sequence
NCU06799 Zinc cluster 210 249

Links

Other Zinc cluster family TFs
Other Neurospora crassa TFs

125 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30169.m006532 Ricinus communis 30169.m006532 N 0.000
Aquca_037_00091 Aquilegia coerulea Aquca_037_00091 N 0.000
BGIOSGA020460 Oryza indica BGIOSGA020460 N 0.000
Bo7g097160 Brassica oleracea Bo7g097160 N 0.000
Bo9g013770 Brassica oleracea Bo9g013770 N 0.000
Bostr.10199s0021 Boechera stricta Bostr.10199s0021 N 0.000
Bra009735 Brassica rapa Bra009735 N 0.000
Bra026466 Brassica rapa Bra026466 N 0.000
Cagra.8922s0001 Capsella grandiflora Cagra.8922s0001 N 0.000
cassava29286.valid.m1 Manihot esculenta cassava29286.valid.m1 N 0.000
cassava7220.valid.m1 Manihot esculenta cassava7220.valid.m1 N 0.000
Ca_03953 Cicer arietinum Ca_03953 N 0.000
Ciclev10004760m.g Citrus clementina Ciclev10004760m.g N 0.000
Cla004302 Citrullus lanatus Cla004302 N 0.000
Cucsa.012950 Cucumis sativus Cucsa.012950 N 0.000
evm.TU.supercontig_3.54 Carica papaya evm.TU.supercontig_3.54 N 0.000
gene13107-v1.0-hybrid Fragaria vesca gene13107-v1.0-hybrid N 0.000
GLYMA04G41691 Glycine max GLYMA04G41691 N 0.000
GLYMA06G13100 Glycine max GLYMA06G13100 N 0.000
GLYMA13G08390 Glycine max GLYMA13G08390 N 0.000
GLYMA14G31370 Glycine max GLYMA14G31370 N 0.000
Gorai.008G270500 Gossypium raimondii Gorai.008G270500 N 0.000
GSMUA_Achr7G24590_001 Musa acuminata GSMUA_Achr7G24590_001 N 0.000
LPERR05G23180 Leersia perrieri LPERR05G23180 N 0.000
Lus10014934.g Linum usitatissimum Lus10014934.g N 0.000
MDP0000831937 Malus domestica MDP0000831937 N 0.000
mgf001401m Mimulus guttatus mgf001401m N 0.000
mgf006107m Mimulus guttatus mgf006107m N 0.000
MTR_3g090900 Medicago truncatula MTR_3g090900 N 0.000
OB05G35020 Oryza brachyantha OB05G35020 N 0.000
OBART05G27520 Oryza barthii OBART05G27520 N 0.000
OGLUM05G29030 Oryza glumaepatula OGLUM05G29030 N 0.000
OLONG_028119 Oryza longistaminata OLONG_028119 N 0.000
OMERI05G23510 Oryza meridionalis OMERI05G23510 N 0.000
ONIVA05G29570 Oryza nivara ONIVA05G29570 N 0.000
OPUNC05G25110 Oryza punctata OPUNC05G25110 N 0.000
orange1.1g010092m.g Citrus sinensis orange1.1g010092m.g N 0.000
ORGLA05G0239100 Oryza glaberrima ORGLA05G0239100 N 0.000
ORUFI05G29480 Oryza rufipogon ORUFI05G29480 N 0.000
Pavir.J13718 Panicum virgatum Pavir.J13718 N 0.000
PGSC0003DMG400009072 Solanum tuberosum PGSC0003DMG400009072 N 0.000
PK06897.1 Cannabis sativa PK06897.1 N 0.000
Pm019782 Prunus mume Pm019782 N 0.000
POPTR_0012s01430 Populus trichocarpa POPTR_0012s01430 N 0.000
POPTR_0015s02320 Populus trichocarpa POPTR_0015s02320 N 0.000
PRUPE_ppa004259mg Prunus persica PRUPE_ppa004259mg N 0.000
SapurV1A.0377s0060 Salix purpurea SapurV1A.0377s0060 N 0.000
SapurV1A.1227s0040 Salix purpurea SapurV1A.1227s0040 N 0.000
SapurV1A.4845s0010 Salix purpurea SapurV1A.4845s0010 N 0.000
Si021904m.g Setaria italica Si021904m.g N 0.000
SIGE Vitis vinifera VIT_16s0050g02520 N 0.000
SIGE Arabidopsis lyrata fgenesh2_kg.6__2403__AT5G24120.1 N 0.000
SIGE Arabidopsis thaliana AT5G24120 N 0.000
Solyc03g007370.2 Solanum lycopersicum Solyc03g007370.2 N 0.000
TCM_015349 Theobroma cacao TCM_015349 N 0.000
Thhalv10004166m.g Eutrema salsugineum Thhalv10004166m.g N 0.000