Bra009735 (Brassica rapa)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04542 (Sigma70_r2) IPR007627 Bra009735 T323781_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Bra009735.1-P Sigma 70 276 348

Links

Other Sigma 70 family TFs
Other Brassica rapa TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo7g097160 Brassica oleracea Bo7g097160 N 1.000
SIGE Arabidopsis thaliana AT5G24120 N 0.943
Bo9g013770 Brassica oleracea Bo9g013770 N 0.943
Bra026466 Brassica rapa Bra026466 N 0.943
SIGE Arabidopsis lyrata fgenesh2_kg.6__2403__AT5G24120.1 N 0.943
Thhalv10004166m.g Eutrema salsugineum Thhalv10004166m.g N 0.943
Bostr.10199s0021 Boechera stricta Bostr.10199s0021 N 0.929
Cagra.8922s0001 Capsella grandiflora Cagra.8922s0001 N 0.929
Carubv10000608m.g Capsella rubella Carubv10000608m.g N 0.929
PK06897.1 Cannabis sativa PK06897.1 N 0.870
PRUPE_ppa004259mg Prunus persica PRUPE_ppa004259mg N 0.857
PGSC0003DMG400009072 Solanum tuberosum PGSC0003DMG400009072 N 0.843
MDP0000831937 Malus domestica MDP0000831937 N 0.843
mgf001401m Mimulus guttatus mgf001401m N 0.841
SIGE Vitis vinifera VIT_16s0050g02520 N 0.826
Cla004302 Citrullus lanatus Cla004302 N 0.826
Cucsa.012950 Cucumis sativus Cucsa.012950 N 0.826
Solyc03g007370.2 Solanum lycopersicum Solyc03g007370.2 N 0.814
mgf006107m Mimulus guttatus mgf006107m N 0.814
gene13107-v1.0-hybrid Fragaria vesca gene13107-v1.0-hybrid N 0.814
Ciclev10004760m.g Citrus clementina Ciclev10004760m.g N 0.812
orange1.1g010092m.g Citrus sinensis orange1.1g010092m.g N 0.812
Pm019782 Prunus mume Pm019782 N 0.800
POPTR_0012s01430 Populus trichocarpa POPTR_0012s01430 N 0.797
Gorai.008G270500 Gossypium raimondii Gorai.008G270500 N 0.797
Lus10014934.g Linum usitatissimum Lus10014934.g N 0.797
GLYMA06G13100 Glycine max GLYMA06G13100 N 0.786
Ca_03953 Cicer arietinum Ca_03953 N 0.786
cassava7220.valid.m1 Manihot esculenta cassava7220.valid.m1 N 0.786
TCM_015349 Theobroma cacao TCM_015349 N 0.783
evm.TU.supercontig_3.54 Carica papaya evm.TU.supercontig_3.54 N 0.783
GLYMA04G41691 Glycine max GLYMA04G41691 N 0.771
30169.m006532 Ricinus communis 30169.m006532 N 0.771
SapurV1A.0377s0060 Salix purpurea SapurV1A.0377s0060 N 0.771
SapurV1A.1227s0040 Salix purpurea SapurV1A.1227s0040 N 0.768
SapurV1A.4845s0010 Salix purpurea SapurV1A.4845s0010 N 0.768
Aquca_037_00091 Aquilegia coerulea Aquca_037_00091 N 0.757
GSMUA_Achr7G24590_001 Musa acuminata GSMUA_Achr7G24590_001 N 0.754
GLYMA13G08390 Glycine max GLYMA13G08390 N 0.743
MTR_3g090900 Medicago truncatula MTR_3g090900 N 0.729
GLYMA14G31370 Glycine max GLYMA14G31370 N 0.714
cassava29286.valid.m1 Manihot esculenta cassava29286.valid.m1 N 0.710