Bo1g051230 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo1g051230 T000724_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF054
M06647_2.00 		Arabidopsis thaliana
NNNNNNNNNHHDSCRCCGHC
GDCGGYGSHDDNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
At4g28140_col_a 		0.802 0.960
ERF054
M06648_2.00 		Arabidopsis thaliana
NNNNHDBCRCCGHCM
KGDCGGYGVHDNNNN		 Dap-seq
OMalley et al.(2016)
At4g28140_colamp_a 		0.802 0.960
AT5G65130
M06686_2.00 		Arabidopsis thaliana
YCDYCDCCRCCGCCN
NGGCGGYGGHGRHGR		 Dap-seq
OMalley et al.(2016)
At5g65130_col_a 		0.689 0.760
AT5G65130
M06687_2.00 		Arabidopsis thaliana
NNNNHNNHDSCRCCGMCMW
WKGKCGGYGSHDNNDNNNN		 Dap-seq
OMalley et al.(2016)
At5g65130_colamp_a 		0.689 0.760
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo1g051230.1 AP2 136 187

Links

Other AP2 family TFs
Other Brassica oleracea TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
scaffold_803239.1 Arabidopsis lyrata scaffold_803239.1 I 0.689
scaffold_304438.1 Arabidopsis lyrata scaffold_304438.1 I 0.719
fgenesh2_kg.7__195__AT4G39780.1 Arabidopsis lyrata fgenesh2_kg.7__195__AT4G39780.1 I 0.680
fgenesh2_kg.7__1395__AT4G28140.1 Arabidopsis lyrata fgenesh2_kg.7__1395__AT4G28140.1 I 0.802
ERF054 Arabidopsis thaliana AT4G28140 D 0.802
ERF053 Arabidopsis thaliana AT2G20880 I 0.719
ERF060 Arabidopsis thaliana AT4G39780 I 0.680
AT5G65130 Arabidopsis thaliana AT5G65130 D 0.689
Bostr.7903s0066 Boechera stricta Bostr.7903s0066 I 0.683
Bostr.7867s0648 Boechera stricta Bostr.7867s0648 I 0.802
Bostr.25542s0167 Boechera stricta Bostr.25542s0167 I 0.680
Bo8g054130 Brassica oleracea Bo8g054130 I 0.802
Bo8g102130 Brassica oleracea Bo8g102130 I 0.719
Bo7g111910 Brassica oleracea Bo7g111910 I 0.782
Bo3g100470 Brassica oleracea Bo3g100470 I 0.684
Bra031146 Brassica rapa Bra031146 I 0.711
Bra026280 Brassica rapa Bra026280 I 0.815
Bra024222 Brassica rapa Bra024222 I 0.782
Bra010383 Brassica rapa Bra010383 I 0.802
Cagra.1225s0083 Capsella grandiflora Cagra.1225s0083 I 0.802
Cagra.8551s0004 Capsella grandiflora Cagra.8551s0004 I 0.683
Cagra.5414s0001 Capsella grandiflora Cagra.5414s0001 I 0.678
Carubv10005203m.g Capsella rubella Carubv10005203m.g I 0.802
Carubv10007787m.g Capsella rubella Carubv10007787m.g I 0.678
Carubv10014129m.g Capsella rubella Carubv10014129m.g I 0.683
Thhalv10025862m.g Eutrema salsugineum Thhalv10025862m.g I 0.794
Gorai.012G130600 Gossypium raimondii Gorai.012G130600 I 0.696
chr5.CM0909.290.nc Lotus japonicus chr5.CM0909.290.nc I 0.677
VIT_19s0014g03180 Vitis vinifera VIT_19s0014g03180 I 0.721