Bra040309 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra040309 T001251_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF014
M06581_2.00 		Arabidopsis thaliana
YCDYCDCCACCGHCD
HGDCGGTGGHGRHGR		 Dap-seq
OMalley et al.(2016)
AT1G44830_col_a 		0.796 1.000
ERF012
M06570_2.00 		Arabidopsis thaliana
NHNNHNHHDHHDCCACCGHC
GDCGGTGGHDDHDDNDNNDN		 Dap-seq
OMalley et al.(2016)
DREB26_col_a 		0.782 0.960
ERF013
M06601_2.00 		Arabidopsis thaliana
DYCACCGHCAHHDNHNNNNNN
NNNNNNDNHDDTGDCGGTGRH		 Dap-seq
OMalley et al.(2016)
At1g77640_col_a 		0.763 0.960
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra040309.1-P AP2 24 75

Links

Other AP2 family TFs
Other Brassica rapa TFs

127 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_42450 Aegilops tauschii F775_42450 I
F775_01070 Aegilops tauschii F775_01070 I
AMTR_s00022p00165560 Amborella trichopoda AMTR_s00022p00165560 I
GIS2 Arabidopsis lyrata fgenesh2_kg.6__609__AT5G06650.1 I
ZFP5 Arabidopsis thaliana AT1G10480 D
GIS2 Arabidopsis thaliana AT5G06650 I
Bostr.2902s0137 Boechera stricta Bostr.2902s0137 I
Bostr.13671s0437 Boechera stricta Bostr.13671s0437 I
Bostr.13129s0308 Boechera stricta Bostr.13129s0308 I
BRADI4G30920 Brachypodium distachyon BRADI4G30920 I
BRADI4G37760 Brachypodium distachyon BRADI4G37760 I
Bo9g011450 Brassica oleracea Bo9g011450 I
Bo2g007320 Brassica oleracea Bo2g007320 I
Bo9g166240 Brassica oleracea Bo9g166240 I
Bo8g109510 Brassica oleracea Bo8g109510 I
Bra028724 Brassica rapa Bra028724 I
Bra008787 Brassica rapa Bra008787 I
PK10012.1 Cannabis sativa PK10012.1 I
Cagra.1504s0017 Capsella grandiflora Cagra.1504s0017 I
Cagra.3166s0007 Capsella grandiflora Cagra.3166s0007 I
Carubv10002570m.g Capsella rubella Carubv10002570m.g I
Carubv10003685m.g Capsella rubella Carubv10003685m.g I
Carubv10003820m.g Capsella rubella Carubv10003820m.g I
Carubv10018785m.g Capsella rubella Carubv10018785m.g I
evm.TU.supercontig_116.88 Carica papaya evm.TU.supercontig_116.88 I
evm.TU.supercontig_1307.1 Carica papaya evm.TU.supercontig_1307.1 I
evm.TU.supercontig_51.84 Carica papaya evm.TU.supercontig_51.84 I
Ca_08116 Cicer arietinum Ca_08116 I
Ciclev10003844m.g Citrus clementina Ciclev10003844m.g I
orange1.1g046965m.g Citrus sinensis orange1.1g046965m.g I
Thhalv10008773m.g Eutrema salsugineum Thhalv10008773m.g I
Thhalv10015891m.g Eutrema salsugineum Thhalv10015891m.g I
gene05169-v1.0-hybrid Fragaria vesca gene05169-v1.0-hybrid I
gene05263-v1.0-hybrid Fragaria vesca gene05263-v1.0-hybrid I
GLYMA19G40220 Glycine max GLYMA19G40220 I
GLYMA06G14783 Glycine max GLYMA06G14783 I
GLYMA03G37610 Glycine max GLYMA03G37610 I
MLOC_4507 Hordeum vulgare MLOC_4507 I
LPERR09G07930 Leersia perrieri LPERR09G07930 I
LPERR08G07840 Leersia perrieri LPERR08G07840 I
Lus10017229.g Linum usitatissimum Lus10017229.g I
chr5.LjT04G07.90.nd Lotus japonicus chr5.LjT04G07.90.nd I
MDP0000165710 Malus domestica MDP0000165710 I
MDP0000121370 Malus domestica MDP0000121370 I
cassava45710.m1 Manihot esculenta cassava45710.m1 I
cassava44297.m1 Manihot esculenta cassava44297.m1 I
OBART09G11250 Oryza barthii OBART09G11250 I
OB09G17800 Oryza brachyantha OB09G17800 I
ORGLA09G0084000 Oryza glaberrima ORGLA09G0084000 I
OGLUM09G11630 Oryza glumaepatula OGLUM09G11630 I
BGIOSGA029710 Oryza indica BGIOSGA029710 I
OLONG_006424 Oryza longistaminata OLONG_006424 I
OMERI09G08780 Oryza meridionalis OMERI09G08780 I
ONIVA09G10990 Oryza nivara ONIVA09G10990 I
OPUNC09G09720 Oryza punctata OPUNC09G09720 I
ORUFI09G12050 Oryza rufipogon ORUFI09G12050 I
OS09G0431900 Oryza sativa OS09G0431900 I
Pavir.Bb02239 Panicum virgatum Pavir.Bb02239 I
Pavir.Ha01090 Panicum virgatum Pavir.Ha01090 I
Pavir.Ia03096 Panicum virgatum Pavir.Ia03096 I
Pavir.J36164 Panicum virgatum Pavir.J36164 I
Pavir.Ia03263 Panicum virgatum Pavir.Ia03263 I
Pavir.Ib01877 Panicum virgatum Pavir.Ib01877 I
Pavir.Ib01803 Panicum virgatum Pavir.Ib01803 I
Pavir.Ib01788 Panicum virgatum Pavir.Ib01788 I
e_gw1.34.233.1 Physcomitrella patens e_gw1.34.233.1 I
Pm008291 Prunus mume Pm008291 I
30045.m000471 Ricinus communis 30045.m000471 I
SELMODRAFT_450839 Selaginella moellendorffii SELMODRAFT_450839 I
SELMODRAFT_405785 Selaginella moellendorffii SELMODRAFT_405785 I
SELMODRAFT_450832 Selaginella moellendorffii SELMODRAFT_450832 I
Si028367m.g Setaria italica Si028367m.g I
Si031489m.g Setaria italica Si031489m.g I
Si037914m.g Setaria italica Si037914m.g I
Solyc10g078970.1 Solanum lycopersicum Solyc10g078970.1 I
Solyc10g078990.1 Solanum lycopersicum Solyc10g078990.1 I
PGSC0003DMG400011450 Solanum tuberosum PGSC0003DMG400011450 I
Sb02g025390 Sorghum bicolor Sb02g025390 I
Sb01g034110 Sorghum bicolor Sb01g034110 I
TCM_044725 Theobroma cacao TCM_044725 I
Traes_5DL_DD8A0F6BE Triticum aestivum Traes_5DL_DD8A0F6BE I
Traes_5DL_B97546DA11 Triticum aestivum Traes_5DL_B97546DA11 I
Traes_5BL_3E6B0CD61 Triticum aestivum Traes_5BL_3E6B0CD61 I
Traes_5AL_81EFE5211 Triticum aestivum Traes_5AL_81EFE5211 I
TRIUR3_22340 Triticum urartu TRIUR3_22340 I
TRIUR3_34498 Triticum urartu TRIUR3_34498 I
VIT_08s0040g00750 Vitis vinifera VIT_08s0040g00750 I
GRMZM2G161255 Zea mays GRMZM2G161255 I
GRMZM2G403590 Zea mays GRMZM2G403590 I
GRMZM2G703281 Zea mays GRMZM2G703281 I
GRMZM2G115388 Zea mays GRMZM2G115388 I
GRMZM2G108818 Zea mays GRMZM2G108818 I
GRMZM2G037574 Zea mays GRMZM2G037574 I